Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k24
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    29   0.27 
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    26   2.5  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    25   4.4  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   5.8  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    24   7.7  

>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 104 EQAYYKVLPYDPMSWTNVPTPSPDNFNDGR 15
           E+A++K+L   P  W + P+ S D+FN  R
Sbjct: 413 EKAWWKMLLPSPEQWNSWPSSSRDSFNSYR 442


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -1

Query: 148 DLIAKVTPETIAIIANRHITRFFHTIQ*VGPMSLPHLQIISMTDGKSS 5
           DL   + P T   +  R   +    +   GP+ + HL ++S TD  ++
Sbjct: 48  DLRHMMEPHTAIRLKERKANKIKDYLTMAGPLGVTHLLVLSRTDNNAN 95


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 27  EIIWRWGRDIGPTHWIVWKNLVICLFAIIAMVSGVTFAIKSMLENL*F 170
           EII   G  +   HW++W  L   L  ++A+ S     +K+  ++L F
Sbjct: 218 EIIVYTGIALIAQHWLIWLVLGWVLCNMVAISSSYACTVKNKEQSLDF 265


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +2

Query: 59  SNSLDRMEEPCN--MPVRDNRNGLRG 130
           SN+LD++    +  +PVR NRN  RG
Sbjct: 723 SNTLDQLSGNADFELPVRGNRNNRRG 748


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 110 YREQAYYKVLPYDPMSWTNVPTPSPDN 30
           +R + YY  L  D    TN   PSPD+
Sbjct: 155 WRARLYYSFLQADMDYLTNYARPSPDS 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,596
Number of Sequences: 5004
Number of extensions: 23785
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)