Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k24
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0234 - 6116931-6117052,6117549-6118369,6118573-6118601,611...    28   2.4  

>09_02_0234 -
           6116931-6117052,6117549-6118369,6118573-6118601,
           6118711-6119020,6119469-6119476,6120104-6120232,
           6120341-6120445
          Length = 507

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 138 QKSPLRPLRLSRTGILQGSSIRSNELDQCP 49
           Q++P  PL++    ++ GSS++ + +D  P
Sbjct: 251 QRTPFSPLKIDNVEVIAGSSLQEDNIDYNP 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,101,932
Number of Sequences: 37544
Number of extensions: 132382
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)