Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k24
(403 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54682| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_19063| Best HMM Match : rve (HMM E-Value=3.6e-14) 29 1.9
SB_53674| Best HMM Match : rve (HMM E-Value=0.00095) 29 1.9
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 28 2.5
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_21746| Best HMM Match : PHD (HMM E-Value=0.066) 27 7.6
SB_9777| Best HMM Match : PHD (HMM E-Value=0.066) 27 7.6
SB_6377| Best HMM Match : Exo_endo_phos (HMM E-Value=6.5e-10) 27 7.6
SB_2883| Best HMM Match : Exo_endo_phos (HMM E-Value=2.1e-09) 27 7.6
SB_48487| Best HMM Match : RWP-RK (HMM E-Value=6.1) 26 10.0
SB_20186| Best HMM Match : hATC (HMM E-Value=0.14) 26 10.0
SB_42597| Best HMM Match : 7tm_1 (HMM E-Value=7.1e-22) 26 10.0
>SB_54682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -1
Query: 187 IISSLENHRFSSIDLIAKVTPETIAIIANRHITRFFHTIQ*VGPMSLPHL 38
++ SL N + S +++ V ET+ II +R +TR I+ P++ HL
Sbjct: 8 VLKSLLNEQIVSDEVLLTVMAETVNIINSRPLTRNSDDIEDEMPLTPNHL 57
>SB_19063| Best HMM Match : rve (HMM E-Value=3.6e-14)
Length = 467
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -1
Query: 187 IISSLENHRFSSIDLIAKVTPETIAIIANRHITRFFHTIQ*VGPMSLPHL 38
++ SL N + S +++ V ET+ II +R +TR I+ P++ HL
Sbjct: 320 VLKSLLNEQIVSDEVLLTVMAETVNIINSRPLTRNSDDIEDEMPLTPNHL 369
>SB_53674| Best HMM Match : rve (HMM E-Value=0.00095)
Length = 263
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -1
Query: 187 IISSLENHRFSSIDLIAKVTPETIAIIANRHITRFFHTIQ*VGPMSLPHL 38
++ SL N + S +++ V ET+ II +R +TR I+ P++ HL
Sbjct: 96 VLKSLLNEQIVSDEVLLTVMAETVNIINSRPLTRNSDDIEDEMPLTPNHL 145
>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 1269
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 113 DYREQAYYKVLPYDPMSWTNVPTPSP 36
D R QAY ++ YDPM T+ P P
Sbjct: 700 DMRAQAYQPMVHYDPMPQTSNPAARP 725
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 122 DHCDYREQAYYKVLPYDPMSW 60
D CD+ EQ Y K+L Y W
Sbjct: 1363 DFCDFCEQDYRKILKYGATRW 1383
>SB_21746| Best HMM Match : PHD (HMM E-Value=0.066)
Length = 203
Score = 26.6 bits (56), Expect = 7.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 89 CNMPVRDNRNGLRGDFC 139
C+ PVR N+ G++ DFC
Sbjct: 103 CSKPVRINQRGIQCDFC 119
>SB_9777| Best HMM Match : PHD (HMM E-Value=0.066)
Length = 203
Score = 26.6 bits (56), Expect = 7.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 89 CNMPVRDNRNGLRGDFC 139
C+ PVR N+ G++ DFC
Sbjct: 103 CSKPVRINQRGIQCDFC 119
>SB_6377| Best HMM Match : Exo_endo_phos (HMM E-Value=6.5e-10)
Length = 450
Score = 26.6 bits (56), Expect = 7.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 89 CNMPVRDNRNGLRGDFC 139
C+ PVR N+ G++ DFC
Sbjct: 103 CSKPVRINQRGIQCDFC 119
>SB_2883| Best HMM Match : Exo_endo_phos (HMM E-Value=2.1e-09)
Length = 598
Score = 26.6 bits (56), Expect = 7.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 89 CNMPVRDNRNGLRGDFC 139
C+ PVR N+ G++ DFC
Sbjct: 100 CSKPVRINQRGIQCDFC 116
>SB_48487| Best HMM Match : RWP-RK (HMM E-Value=6.1)
Length = 426
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 122 DHCDYREQAYYKVLPYDPMSW 60
D CD+ +Q Y K+L Y W
Sbjct: 190 DFCDFCDQDYRKILKYGATRW 210
>SB_20186| Best HMM Match : hATC (HMM E-Value=0.14)
Length = 709
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 122 DHCDYREQAYYKVLPYDPMSW 60
D CD+ +Q Y K+L Y W
Sbjct: 246 DFCDFCDQDYRKILKYGATRW 266
>SB_42597| Best HMM Match : 7tm_1 (HMM E-Value=7.1e-22)
Length = 347
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 63 THWIVWKNLVICLFAIIAMVSGVTFAIKSMLENL 164
T W+ + L FA++A ++G+T +L L
Sbjct: 12 TEWVQYGQLTYSQFAVVAFLNGITILPAIILNGL 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,753,134
Number of Sequences: 59808
Number of extensions: 161186
Number of successful extensions: 336
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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