Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k24
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81076-2|CAB03051.3|  333|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    26   8.8  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    26   8.8  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    26   8.8  
AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride ...    26   8.8  

>Z81076-2|CAB03051.3|  333|Caenorhabditis elegans Hypothetical
           protein F35C5.2 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 63  THWIVWKNLVICLFAIIAMVSGVTFAIKSMLENL*FS 173
           T WI+  N++ C F  I    GV + I+ M ++  FS
Sbjct: 19  TSWILRLNIIYCTFLSIGCFVGVAYCIRFMRKHPIFS 55


>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 66  HWIVWKNLVICLFAIIAMVSGV 131
           HWIV+  ++ C+F++++   G+
Sbjct: 421 HWIVYPIVISCIFSVVSYPHGL 442


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform b protein.
          Length = 1085

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 66  HWIVWKNLVICLFAIIAMVSGV 131
           HWIV+  ++ C+F++++   G+
Sbjct: 421 HWIVYPIVISCIFSVVSYPHGL 442


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
           chloride channel CLH-4b protein.
          Length = 1084

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 66  HWIVWKNLVICLFAIIAMVSGV 131
           HWIV+  ++ C+F++++   G+
Sbjct: 421 HWIVYPIVISCIFSVVSYPHGL 442


>AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 978

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 66  HWIVWKNLVICLFAIIAMVSGV 131
           HWIV+  ++ C+F++++   G+
Sbjct: 349 HWIVYPIVISCIFSVVSYPHGL 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,507,158
Number of Sequences: 27780
Number of extensions: 129295
Number of successful extensions: 309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)