Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k21
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    27   3.5  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   4.6  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.1  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    26   6.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   6.1  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   8.1  

>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
 Frame = +3

Query: 60  APVRRPLEKTFPLNFKFGAGSSSYQIEGAWNVSDKGESIQDRYAHEHPEKVVDGSNGDVA 239
           AP R P ++   L F         +  G   V    E     Y  EH    +   +    
Sbjct: 369 APGRGPSKRGVGLQFGPDVSKRFCEANGLKAVIRSHEVRDQGYEVEHDGYCITVFSAPNY 428

Query: 240 CDSYNLWRRDIEMATELGLDHYRF-SISWPRLLPSGYPN 353
           CDS       I++  ++ LD ++F ++  P + P  Y N
Sbjct: 429 CDSTGNLGAVIKVKEDMELDFHQFEAVPHPNIRPMAYAN 467


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 165  GESIQDRYAHEHPEKVVDGSNGDVACDSYNLWRRDIEMATE 287
            G  ++D    E    VVD ++  V  D   LW+R+  +A +
Sbjct: 878  GWEVEDLAPEEAVNDVVDDASAFVGADEIFLWKRNSPLAAD 918


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 468 PGILEEVHNDRL*LQVRYYSLGGRLSNY-YSSSCRLH*CNSGSRLAEDGAMKWRI 307
           P  L ++HND       YY+ G  LS Y Y SS + +  +SG    ED    W I
Sbjct: 215 PCKLIDLHNDSFLHHSNYYA-GFGLSYYLYLSSMKAYINSSGCLWYEDATSFWDI 268


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 536 RVHDARVVSKPVDYEGIGPASEILEYLRK 450
           ++ D   +S  +DY G+GP    L+Y  +
Sbjct: 587 QIQDTHSISAGLDYPGVGPELSELKYTNR 615


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 144 AWNVSDKGESIQDRYAHEHPEKVVDGSNGD 233
           AW V D GE  + +   +  E++VDG + +
Sbjct: 52  AWIVEDLGEKYRVKLERDGSERIVDGFDAE 81


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 181 SCMLSPLSLTFHAPSI*YDDEPAPNLKFRGNVFSSGLLTGAFA*TNGLYTANKN 20
           +C++  L+ T+H  +I   +E  PNL      F   L  G F   N  Y   K+
Sbjct: 105 ACLIYRLACTYHTTAISLCNEKPPNLVQACQYFQ--LSAGCFRYINDFYIYTKS 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,038
Number of Sequences: 5004
Number of extensions: 66421
Number of successful extensions: 214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)