Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k21
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)             201   5e-52
SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)        192   3e-49
SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)          28   8.6  

>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score =  201 bits (490), Expect = 5e-52
 Identities = 103/236 (43%), Positives = 145/236 (61%), Gaps = 4/236 (1%)
 Frame = +3

Query: 12  MLLFLLAVYSPLVYANA-PVRRPLEK-TFPLNFKFGAGSSSYQIEGAWNVSDKGESIQDR 185
           +L  LL +   L Y +  PVR   E  TFP +F++G+ +S+YQIEGAW+V  KG  + D 
Sbjct: 8   VLALLLILQPALSYKSVDPVRDKFEYGTFPADFEWGSATSAYQIEGAWDVDGKGLGLWDY 67

Query: 186 YAHEHP-EKVVDGSNGDVACDSYNLWRRDIEMATELGLDHYRFSISWPRLLPSGYPNYIS 362
             H H    +     GDVACDSY+ ++ D+++   LG+  YRFSISWPR+LP G    I+
Sbjct: 68  LTHSHQFSHLFKNQTGDVACDSYHKYKEDVQLLRNLGVKAYRFSISWPRILPKGTKEIIN 127

Query: 363 EDGRNYYNNLIDGLLKNNIEPVITIYHYELPQVFQDLGGWTNPLIVDWFADYASVVYSLF 542
             G  YYNNLI+ LL  NI+PV TIYH++LP  F+  G WTN  I++ F DYA + +  F
Sbjct: 128 TKGIEYYNNLINELLHYNIQPVATIYHWDLPVPFRMAGSWTNSSIIEHFNDYAEICFKNF 187

Query: 543 ADRVKIWLTVNEPLIICDVSYIGIS-APGLYSPDHGLFLCNKHVLLAHAKAWRLYD 707
            DRVK W+T+NEP I  ++ ++    AP   S +   +L   ++LLAHAK +  Y+
Sbjct: 188 GDRVKKWITINEPAI--ELLFMKTHWAPPASSREQ--YLAGHNLLLAHAKVYHTYN 239


>SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)
          Length = 204

 Score =  192 bits (467), Expect = 3e-49
 Identities = 80/164 (48%), Positives = 114/164 (69%)
 Frame = +3

Query: 90  FPLNFKFGAGSSSYQIEGAWNVSDKGESIQDRYAHEHPEKVVDGSNGDVACDSYNLWRRD 269
           FP +F +G  ++++QIEGAWN   KG +I D ++H+    + +  N D+ACDSY+    D
Sbjct: 15  FPESFIWGVATAAHQIEGAWNEDGKGPNIWDAFSHK-TGNIHNNENADIACDSYHKTDED 73

Query: 270 IEMATELGLDHYRFSISWPRLLPSGYPNYISEDGRNYYNNLIDGLLKNNIEPVITIYHYE 449
           I++   LG+ HYRFSISW R+LP G  + +++ G  YYN +ID LL  NI+PV T+YH++
Sbjct: 74  IQLLKSLGVSHYRFSISWARILPDGLLDVVNKSGVEYYNRVIDKLLAVNIQPVATLYHFD 133

Query: 450 LPQVFQDLGGWTNPLIVDWFADYASVVYSLFADRVKIWLTVNEP 581
           LPQ  QD GGW N  +++WFA YA V + LF DRV++WLT+NEP
Sbjct: 134 LPQALQDKGGWLNSRVIEWFAGYARVCFKLFGDRVRLWLTINEP 177


>SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 528 VYSLFADRVKI-WLTVNEPLIICDVSYIGISAPGLYSP 638
           V+SLF D ++I W+  +EP+ + DV Y   S  G+  P
Sbjct: 162 VFSLFVDLIQIVWIVDSEPVTLADVVYSFSSFFGIVVP 199


>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 195 EHPEKVVDGSNGDV-ACDSYNLWRRDIEMATELGL 296
           E P KV++G+ G +  CD++N W+   E+   LG+
Sbjct: 254 ELPVKVLNGAPGFINLCDAFNSWQLVRELHQSLGI 288


>SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1761

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 575 VHRQPDLDTVGE*RVHDARVVSKPVDYEGIGPASEILEYLR 453
           V+ QP  DT  +   HD  V+ K +D++   P+S  + YL+
Sbjct: 670 VNYQPHYDTFSD-EEHDIWVMCKHLDHQTASPSSTAVPYLQ 709


>SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)
          Length = 846

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 499 STGLLTTRASCTLYSPTVSRSG 564
           ST + T  +SC +Y+PT+ RSG
Sbjct: 102 STVIPTVTSSCRIYTPTLHRSG 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,227,390
Number of Sequences: 59808
Number of extensions: 483767
Number of successful extensions: 1409
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)