Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k21
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    32   0.006
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.71 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 31.9 bits (69), Expect = 0.006
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 230 TIAAVNHFLWMFMSIAILYALTFITDIPCALD-LIRRRTRSKLKVQRKCL 84
           T+   NH+LW++    ILY +     + CA++ LI      + K+Q + L
Sbjct: 135 TMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNFLIYPHDTQECKLQMESL 184


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 215 NHFLWMFMSIAILYALTFITDIPCAL 138
           NH+LW++    +LY       + CA+
Sbjct: 109 NHYLWLYHDKTLLYMSKLTLVLSCAM 134


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 380 VVPAVFTDVIRVAAW 336
           VVP+   D++RV +W
Sbjct: 153 VVPSFVKDLVRVVSW 167


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 380 VVPAVFTDVIRVAAW 336
           VVP+   D++RV +W
Sbjct: 153 VVPSFVKDLVRVVSW 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,867
Number of Sequences: 438
Number of extensions: 4706
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)