Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k20
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 30 0.36
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 29 0.48
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 28 1.1
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 3.4
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 26 4.4
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 4.4
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 25 7.8
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 7.8
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 29.9 bits (64), Expect = 0.36
Identities = 19/90 (21%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +2
Query: 326 SRELARVEDEIATLRTVLQSKIRQSSDLKRKLGI-TVWKEITEDVNQGLKNVKESQVYQK 502
++E +E++ + ++Q + +++KL +++++ E N+G +++ S ++
Sbjct: 135 AKERVVLENQFSKTAGIVQGITGEFLRVEKKLDEEALYQDLKELYNEGFRSISVSLMHSY 194
Query: 503 TESVIKTTAEKTSSIIGGITAGVSSKLGQM 592
T + + EK + IG +SSKL M
Sbjct: 195 TYPLHEEVVEKIAKRIGFTDISLSSKLTPM 224
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 29.5 bits (63), Expect = 0.48
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +2
Query: 356 IATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV---KESQVYQKTESVIKTT 526
+ +L T+L +R +SDL + G+ +I + +N ++N ES + + SVIK
Sbjct: 176 VVSLVTILVPPMRMASDLVGQSGLDHLNKIMQSLNFSVENFFPSDESVSFSSSSSVIKRM 235
Query: 527 AEKTSSII 550
++ S++
Sbjct: 236 FKEHESVL 243
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 28.3 bits (60), Expect = 1.1
Identities = 30/132 (22%), Positives = 53/132 (40%)
Frame = +2
Query: 158 YFSFISHRKSFSL*NMSGVQTAEEAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSREL 337
Y SFI M G + + + AGD H+P + + +R E E+
Sbjct: 226 YESFIEDEYPLHPTVMKGEEVTQPS-GWVASAGDFHSPPINPKILAIDCEMVRTENGLEI 284
Query: 338 ARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVI 517
ARV + ++ S + +T + ITE + L+NV + V +S +
Sbjct: 285 ARVTIVDMKSEVIYDEFVKPESPVTDY--VTQYSGITE---EKLRNV--TTVLSDVQSYL 337
Query: 518 KTTAEKTSSIIG 553
K T + + ++G
Sbjct: 338 KKTVDNNTVLLG 349
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = +2
Query: 437 KEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFRS 616
+E +DV++ + E +V+Q + + TA+ T S ++ V L ++ + F
Sbjct: 107 EEDFDDVDEEMLRAAEMEVFQSCQPLAVNTADTTVS-HSTSSSNVPRSLNKIHDPSRFIK 165
Query: 617 IEERVGSAYENVKGKVASRSNST 685
+ + + KVAS SN++
Sbjct: 166 DNDVENRIHVSSASKVASISNTS 188
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 233 MSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIAT 364
++G G++ T ELA L P +L E+ + L E++I T
Sbjct: 88 LTGAGLSSVAKTRRELASLVPADKFKLHPEFVKSLHPRENKIVT 131
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 284 GLTPEQADQLRAE--WSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEI 445
GL E + + R+ W E+A + L+ +++SK+ SSD+ L W E+
Sbjct: 270 GLKEESSHEPRSSQHWKNEVAMKD----LLKNLIKSKLESSSDVNTPLIFDPWPEL 321
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 7.8
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 470 KNVKESQVYQKTESVIKTTAEKTSSIIG--GITAGVSSKLGQMRNSESFRSIEERVGSAY 643
+NVKE + SV E I G GI V K+ + + ESF ER+G Y
Sbjct: 3 QNVKEKHAGKSDTSVSSLECEIDYHIEGSDGIPV-VEPKISEFVDMESFIRRVERLGKKY 61
Query: 644 ENVK 655
+K
Sbjct: 62 GAIK 65
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 482 ESQVYQKTESVIKTTAEKTSSIIGGITAGVSSK 580
ES V+ K E++ + + +T + GIT +SSK
Sbjct: 806 ESFVFNKLEAMAQLPSPRTPVLDAGITQALSSK 838
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,392
Number of Sequences: 5004
Number of extensions: 51922
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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