Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k20
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0437 - 28986459-28986524,28986606-28986731,28986842-289869... 36 0.023
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 35 0.070
10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766 33 0.28
01_06_1009 + 33796450-33796824,33796926-33796970,33797069-337971... 32 0.49
01_01_1127 + 8930593-8932681,8932812-8933401 32 0.49
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 29 2.6
04_02_0013 - 8544589-8544873,8545175-8545339,8545444-8545707,854... 29 2.6
02_01_0286 + 1921049-1921726 29 2.6
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 29 3.5
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 29 4.6
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846... 29 4.6
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 29 4.6
10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565... 28 8.0
>02_05_0437 -
28986459-28986524,28986606-28986731,28986842-28986941,
28987583-28987660,28987857-28987937,28989488-28989624,
28989693-28989743,28989785-28989878,28990091-28990260
Length = 300
Score = 36.3 bits (80), Expect = 0.023
Identities = 20/89 (22%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +2
Query: 281 AGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLG-ITVWKEITEDV 457
+G PEQ L +E+ ++++EI +++ + + D+++++G +T ITE++
Sbjct: 189 SGKIPEQHALLAESKRQEVLQLDNEIVFNEAIIEEREQAIQDIQQQIGELTRTSFITEEI 248
Query: 458 NQGLKNVKESQVYQKTESVIKTTAEKTSS 544
+ ++N + KTE + +K++S
Sbjct: 249 DTNIENSAAATKEAKTELAKASKTQKSNS 277
>03_05_0754 +
27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 34.7 bits (76), Expect = 0.070
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Frame = +2
Query: 305 DQLRA---EWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKN 475
D+ RA EW + + + D+I TL L SK R + D + +L + E+ + L
Sbjct: 220 DEFRAAKKEWGSDRSMLVDQIGTLEVNLDSKTRMAEDFRSRLEMCSQALAHEEGRRKLLE 279
Query: 476 VKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQMRNS 601
+ S++ +V+ + E+ S I + A ++ +R+S
Sbjct: 280 AEMSELKHLYGNVV-SDYEEARSTIESLAAKRDGEIASLRSS 320
>10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766
Length = 943
Score = 32.7 bits (71), Expect = 0.28
Identities = 31/118 (26%), Positives = 57/118 (48%)
Frame = +2
Query: 305 DQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKE 484
D RAE + EL RV+DE+A L + RQ +D T+ E++
Sbjct: 174 DLRRAELAAELGRVKDELA-LAVEATNTARQIADANADKAATLAAEVS------------ 220
Query: 485 SQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFRSIEERVGSAYENVKG 658
+ +S ++T AE+ ++I+ + + S +++N+E+ R +E VG A + + G
Sbjct: 221 -----RLQSELETKAEEATAIVAKLESEASGLRAELQNAEASR--KEDVGRAEQLLHG 271
>01_06_1009 +
33796450-33796824,33796926-33796970,33797069-33797182,
33797679-33797759,33798038-33798211,33798353-33798438,
33799157-33799901
Length = 539
Score = 31.9 bits (69), Expect = 0.49
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Frame = +2
Query: 209 GVQTAEEAMSGTGVAGDIHTPDELAGLTPEQADQLR-AEWSRELARVEDEIATLRTVLQS 385
G +E S G AGDI E +PE + +R + EL + ++ L
Sbjct: 86 GEGDSEPPASSDGAAGDIAASAEQPEASPEDLEDIRQVKRVLELLQKNRDMTFGEVKLTI 145
Query: 386 KIRQSSDLKRK--LGITVWKEIT-EDVNQGLKNVKESQV 493
I D++RK LGI EIT +D+ L V E ++
Sbjct: 146 MIEDPRDIERKRLLGIEDPDEITRDDLADALVEVNEGRI 184
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 31.9 bits (69), Expect = 0.49
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +2
Query: 305 DQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRK---LGITVWKEITEDVNQGLKN 475
D R +W RE AR++ EI R Q +DLKRK L W+ I E + L+
Sbjct: 126 DSRRKDW-RE-ARLKQEIERYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRR 183
Query: 476 VKESQVYQKTESVIKTTAEKTSSIIGGITA 565
K+ + ++ V T EK G +TA
Sbjct: 184 NKKRR-FESFVPVPDTLLEKARQEQGHVTA 212
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +2
Query: 296 EQADQLRAEWSRELARVEDEIATLRT-VLQSKIRQSSDLKR 415
E+ D LRAE + +L+ E+EIA L T + Q++I ++ + R
Sbjct: 674 EREDALRAELASQLSEKEEEIARLNTKINQTEIHATNLISR 714
>04_02_0013 -
8544589-8544873,8545175-8545339,8545444-8545707,
8545822-8545944,8546032-8546151
Length = 318
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/144 (21%), Positives = 61/144 (42%)
Frame = +2
Query: 200 NMSGVQTAEEAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVL 379
+M+G + A A + ++H E GL E+ +LR + + ED++ L+ L
Sbjct: 173 SMAG-RAAALARELKNIKSELHFMQERCGLLEEENKRLREGYDNGVPPEEDDLVRLQ--L 229
Query: 380 QSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGI 559
++ + + S L + E+ N +N Q+ + + + AE ++ G+
Sbjct: 230 EALLAEKSRLAQ-----------ENANLSRENQSLIQLVEYHQLTSQDLAESYEDVMEGM 278
Query: 560 TAGVSSKLGQMRNSESFRSIEERV 631
SS LG++ + E RV
Sbjct: 279 RLDFSSPLGKIDSDEEGERENRRV 302
>02_01_0286 + 1921049-1921726
Length = 225
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 526 RREDVFDHRRHHGRRVQQARSDAQLGVFPLHRRTRR 633
RR+D RRH G R + G FP+ RR RR
Sbjct: 90 RRDDRGSWRRHSGGNAIGLRQERASGGFPVKRRRRR 125
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 293 PEQADQLRAEWSRELARVEDEIATLR 370
P ++DQL W R + +DE+A+L+
Sbjct: 61 PPESDQLARAWLRRVQEAQDEVASLK 86
>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
Length = 1056
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 404 PSFDGSCFAVQFSKSRFHLRHGLARDSIQRVTGL 303
PS G+C A+QF + +L HGL + ++ GL
Sbjct: 543 PSTLGNCLALQFLYLQANLLHGLIPKELNKLRGL 576
>09_05_0015 -
20083143-20083308,20083645-20084017,20084362-20084675,
20085164-20085512,20085678-20085837,20086307-20086618,
20086700-20086820,20087225-20087277
Length = 615
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 528 AVVFITDSVFWYTWLSLTFFKP*LTSSVI-SFHTVMPSLRFKSEL*RILLCSTVL 367
AV + SV++ W + ++F+P L SSV+ VM ++ F ILL VL
Sbjct: 276 AVAQVFSSVYFSAWSNRSYFRPLLFSSVVLLLGNVMYAMAFDLGSLTILLLGRVL 330
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/109 (22%), Positives = 45/109 (41%)
Frame = +2
Query: 329 RELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTE 508
+ L VE+E A +S R+ K++L + ++ +DV++ K VKE +T
Sbjct: 294 KALKHVEEENAGEEAAQESGKRKRG--KKQLAEDLMEQDIQDVSEKRKKVKEGTPAAETP 351
Query: 509 SVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFRSIEERVGSAYENVK 655
+ K EK+ + S + + + + + VG VK
Sbjct: 352 KISKKGKEKSKRALDKEGEDASVEEASNKKKKGKKEVVSDVGEKNSKVK 400
>10_08_0472 - 18154797-18155048,18155332-18156318,18156424-18156546,
18156654-18156808,18157611-18157824,18158977-18159077,
18159162-18159285,18159584-18159655,18159897-18159961,
18160167-18160233,18160917-18161015,18161099-18161167,
18161286-18161409,18162507-18162566,18163111-18163634
Length = 1011
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 335 LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDV-NQGLKNVKESQVYQKTES 511
++R + I +R + ++ + S + L ++K+ E++ + G E +VY K +
Sbjct: 829 ISRGQIGIQQVRGLKEANFQLDSLIAEPLRENIYKKSVEEIFSSGTGEFDEEEVYVKIPA 888
Query: 512 VIKTTAEKTSSIIGGI 559
+ AEK SI+ I
Sbjct: 889 DLIINAEKAKSIVQDI 904
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,078,854
Number of Sequences: 37544
Number of extensions: 305289
Number of successful extensions: 947
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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