Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k19
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    27   1.1  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    27   1.4  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   1.4  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   1.9  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   3.3  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   5.8  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   5.8  
SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi...    24   7.7  

>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 258 FYSPIRDYSKEESPAPKY*TVFLILISC 341
           ++SP+ D+ K+E  AP Y  V +  ++C
Sbjct: 163 YFSPVNDHYKKEGLAPAYHRVRMCELAC 190


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +3

Query: 207 KKTNPEPWEAYR-NKQYKF 260
           K+ NP PW++++ N  YKF
Sbjct: 119 KELNPAPWDSFKHNSSYKF 137


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 117 PLYVCVGIGCGGAVFYTLRLALRNPDVSWNKKTNPEPWEAY 239
           PL+V   +G  G    TL++ +  PD  ++     +PW+ +
Sbjct: 22  PLWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQVCDPWQFF 62


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 201 KIHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGSVL 73
           +I Q+YA+   + R  L   L  H   EGS     S++ GS+L
Sbjct: 81  EISQEYARYSKQKRASLRRYLEKHGKLEGS--MKESSINGSLL 121


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 178 LCVILMYLGTRRPTLNHGRLTGTSSTSSILPSET 279
           L  +L  + TR PT+  G +T   S  +I+P ET
Sbjct: 522 LLPVLEKVKTREPTVVMGMVTVYISAGAIIPEET 555


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 141 LSPHIHTEGSKPYASSNLRGS 79
           L+P IH EG + Y+SS  + S
Sbjct: 829 LAPSIHVEGLETYSSSERKDS 849


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 266 RIELVLLVPVSLPWFRVG 213
           RI  VLL+ + LPWF  G
Sbjct: 2   RINFVLLITLILPWFVSG 19


>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
           Mug66|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 168 LRLALRNPDVSWNKKTNPEPWEAY 239
           L L  R+P  SW  K N  PWE +
Sbjct: 83  LLLYERSPKKSWFGKGNTIPWEQW 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,831
Number of Sequences: 5004
Number of extensions: 35403
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)