Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k19
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157...    31   0.34 
02_05_0331 + 28003454-28003912,28004649-28004873,28005017-280053...    29   1.0  
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640...    28   3.2  
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785...    28   3.2  
11_06_0150 - 20640535-20640600,20641299-20641451,20641567-20641830     27   4.2  
02_05_1341 - 35801987-35802472                                         27   4.2  
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134...    27   7.3  
08_02_0227 - 14485676-14487316                                         26   9.7  

>08_01_0189 +
           1578935-1578950,1579227-1579390,1579493-1579605,
           1579850-1580399,1580514-1580813,1581093-1581133,
           1581359-1581606,1581983-1582086,1582177-1582323
          Length = 560

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 183 RNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDY 281
           R  +V WN +   E  EAYR K+     P+RD+
Sbjct: 526 RKYNVKWNDEVTAEDMEAYRMKRIHHDDPMRDF 558


>02_05_0331 +
           28003454-28003912,28004649-28004873,28005017-28005370,
           28005673-28005702,28006869-28007342
          Length = 513

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 141 GCGGAVFYTLRLALRNPDVSWNKKTNPEP 227
           GC  AV  TL  AL   +    KKTNP+P
Sbjct: 385 GCNAAVMSTLLSALVAVEACLGKKTNPQP 413


>11_04_0474 +
           18162538-18163731,18163800-18163855,18163951-18164011,
           18164107-18165495,18166024-18166635,18166706-18166852,
           18166941-18167209,18167322-18167412,18167500-18167757,
           18168376-18168450,18168937-18168945
          Length = 1386

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 217 LVFLFQDTSGLRKARRRV*NTAPPHPIPTHTYRG 116
           L FL +DT G+  A RRV N A P+P    T  G
Sbjct: 671 LKFLNRDTGGVADANRRV-NFAEPNPSKDRTMGG 703


>06_03_0924 -
           25976629-25976979,25977471-25978424,25978512-25978565,
           25979135-25979254,25979357-25979532,25979624-25980107,
           25980541-25980744,25981671-25981877,25982179-25982271,
           25982433-25982621,25983364-25983423,25983591-25983927,
           25984195-25984432,25984614-25984816,25985549-25986554,
           25987125-25987290,25987715-25987824,25987944-25988195,
           25988360-25988402,25988488-25988550,25989512-25989624,
           25990787-25990838
          Length = 1824

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 198 IHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGSV 76
           I ++Y  P+ E  T+  H+LS   +   +  YAS N + SV
Sbjct: 105 IDEEYDGPEVEAATEEDHLLSKKDYFSSNAVYASVNSKVSV 145


>11_06_0150 - 20640535-20640600,20641299-20641451,20641567-20641830
          Length = 160

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 196 TSGLRKARR-RV*NTAPPHPIPTHTYRG 116
           TS  R A+R R+    PP P PTH  RG
Sbjct: 3   TSAARAAKRARIAAPPPPTPTPTHLRRG 30


>02_05_1341 - 35801987-35802472
          Length = 161

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 145 VVELCSILCVWLCVILMYLGTRRPTLNHGRLTGTSSTSSILPSETT 282
           VV L S+LC  +CV  + L  R      G  T T++T++  P+ T+
Sbjct: 2   VVILASLLCALICVAGLALVARCACRRRGAAT-TTTTTTTTPAATS 46


>07_03_1389 +
           26212117-26212119,26212721-26212875,26213402-26213479,
           26214211-26214375,26214453-26214554,26214661-26214786,
           26215454-26215490
          Length = 221

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 183 RNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESP 299
           R+P  S +   +P P  A R  + + YSP+   S+  SP
Sbjct: 158 RSPYRSPSYSRSPSPRYARRRMRERSYSPVESRSRSRSP 196


>08_02_0227 - 14485676-14487316
          Length = 546

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = -3

Query: 246 CSCKPPMVQG-WSSCSKIHQDYAKPDAEYRTQLHHI 142
           C    P   G  SS S     YA P  EY  +LHH+
Sbjct: 133 CQIDAPAGAGPLSSSSPPRYTYAMPGPEYNLRLHHL 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,009,554
Number of Sequences: 37544
Number of extensions: 239247
Number of successful extensions: 572
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)