Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k19
         (401 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in...    30   0.50 
At4g02540.1 68417.m00347 DC1 domain-containing protein contains ...    30   0.66 
At3g49210.1 68416.m05378 expressed protein                             30   0.66 
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ...    29   0.88 
At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein...    29   0.88 
At4g26380.1 68417.m03795 DC1 domain-containing protein contains ...    28   2.0  
At2g22030.1 68415.m02615 kelch repeat-containing F-box family pr...    28   2.0  
At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative ...    28   2.0  
At1g15980.1 68414.m01917 expressed protein                             28   2.0  
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp...    27   4.7  
At1g34200.1 68414.m04243 oxidoreductase family protein similar t...    27   4.7  
At3g49200.1 68416.m05377 hypothetical protein                          27   6.2  
At2g44600.1 68415.m05552 expressed protein                             27   6.2  
At5g66470.1 68418.m08382 expressed protein                             26   8.2  
At5g13250.1 68418.m01522 hypothetical protein                          26   8.2  
At3g23740.1 68416.m02985 expressed protein                             26   8.2  
At3g04900.1 68416.m00532 heavy-metal-associated domain-containin...    26   8.2  
At2g07300.1 68415.m00837 hypothetical protein                          26   8.2  
At1g61540.1 68414.m06933 kelch repeat-containing F-box family pr...    26   8.2  

>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
           interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 373

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 308 ILNCFSNIDQLYYENFSCI 364
           +LNC + + + YYEN SC+
Sbjct: 19  VLNCLARVPRRYYENISCV 37


>At4g02540.1 68417.m00347 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 822

 Score = 29.9 bits (64), Expect = 0.66
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 267 ENRTCTACSCKPPMVQGWSSCSKIHQDYAKPDAEYRTQLHHILSPHIHT 121
           EN+ C AC+  P     + SC +      +  A +R ++HH   PH+ T
Sbjct: 552 ENKLCQACTT-PIYFGNFFSCMQCDFILHEKCANFRRKIHHPTHPHLLT 599


>At3g49210.1 68416.m05378 expressed protein
          Length = 518

 Score = 29.9 bits (64), Expect = 0.66
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -1

Query: 227 WFRVGLLVPRYIRITQSQTQSIEHSSTTSYPHTYI 123
           W R  ++V  ++ ++  QTQ+IE+ +  ++  TY+
Sbjct: 92  WVRTNVVVTDHVIVSDIQTQNIENGNADAFLETYV 126


>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 700

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 267 ENRTCTACSCKPPMVQG-WSSCSKIHQDYAKPDAEYRTQLHHILSPHIHT 121
           EN+ C AC    P+  G + SC K +    +  A +  ++HH + PH+ T
Sbjct: 422 ENKLCQACIT--PIYSGKFYSCMKCNFILHEECANFSRKIHHPIHPHMLT 469


>At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 535

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 183 RNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDY 281
           R  +V +N    PE  EAYR K+     P++D+
Sbjct: 502 RKYNVKYNNDVTPEEMEAYRMKRVHHEDPMKDF 534


>At4g26380.1 68417.m03795 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1016

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 267 ENRTCTACSCKPPMVQGWSSCSKIHQDYAKPDAEYRTQLHHILSPHIHT 121
           E++ C AC   P     + SC++ +    +  A +  ++HH + PH+ T
Sbjct: 762 EDKLCQAC-VMPIYFGNFYSCTQCNYILHEACANFSRKMHHPVHPHVLT 809


>At2g22030.1 68415.m02615 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 383

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 308 ILNCFSNIDQLYYENFSCI 364
           +LNC + + + YY N SC+
Sbjct: 34  VLNCLARVSRRYYPNLSCV 52


>At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative /
           proton pump, putative similar to P-type
           H(+)-transporting ATPase from [Phaseolus vulgaris]
           GI:758250, [Lycopersicon esculentum] GI:1621440,
           SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
           tuberosum] GI:435001; contains InterPro accession
           IPR001757: ATPase, E1-E2 type
          Length = 949

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = -1

Query: 284 RVVSDGRI---ELVLLVPVSLPWFRVGLLVPRYIRITQSQTQSIEHSSTT--SYPHTYIQ 120
           +V+ DGR    E  +LVP  L   ++G +VP   R+ +     I+ S+ T  S P T  Q
Sbjct: 136 KVLRDGRWGEQEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPATKHQ 195

Query: 119 RDQ 111
            D+
Sbjct: 196 GDE 198


>At1g15980.1 68414.m01917 expressed protein
          Length = 461

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +3

Query: 162 YTLRLALRNPDVSWN--KKTNP--EPWEAYRNKQYKFYSPIRDYSKEESPAP 305
           +  RL  R+ DVS N  KK NP  +P+++  +   ++ S   D  ++E P P
Sbjct: 32  FQTRLTSRSSDVSVNLKKKNNPWLDPFDSGEDPDNEYGSLFADGKQDEDPRP 83


>At4g29140.1 68417.m04170 MATE efflux protein-related several
           hypothetical proteins - Arabidopsis thaliana; contains
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 532

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 317 SLVFGGRRFLLRVVSDGRIELVLLV---PVSLPWFRVG 213
           S  FG  RF L  ++  R  + LLV   P+S+ WF VG
Sbjct: 123 SQAFGAHRFKLLSLTLHRTVVFLLVCCVPISVLWFNVG 160


>At1g34200.1 68414.m04243 oxidoreductase family protein similar to
           AX110P [Daucus carota] GI:285739; contains Pfam profiles
           PF01408: Oxidoreductase family NAD-binding Rossmann
           fold, PF02894: Oxidoreductase family C-terminal
           alpha/beta domain
          Length = 352

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 235 LTGTSSTSSILPSETTLRRNLLPPNTKLFF*Y*SVV 342
           ++  ++TSSI  +++  + N  PPNTKL   Y S++
Sbjct: 33  ISAIATTSSIEEAKSFAKSNNFPPNTKLHSSYESLL 68


>At3g49200.1 68416.m05377 hypothetical protein
          Length = 507

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 227 WFRVGLLVPRYIRITQSQTQSIEHSSTTSYPHTYI 123
           W R  ++V  ++ I + QTQ IE+++   +  +Y+
Sbjct: 90  WVRTNVVVEDHVIIPKIQTQHIENANADVFLESYV 124


>At2g44600.1 68415.m05552 expressed protein
          Length = 313

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 240 CKPPMVQGWSSCSKIHQDYAKPDAEYRTQLHHILSPHIHTEGS 112
           C  P+V+   +CS   +    PD  Y  +L     PH+ T  S
Sbjct: 252 CLSPLVRAKPNCSSNWKAKFPPDFGYSGELKSPAKPHLSTAAS 294


>At5g66470.1 68418.m08382 expressed protein
          Length = 427

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 191 RITQSQTQSIEHSSTTSYPHTYIQRDQSLMLLQ 93
           R+T+S  Q+  H+STTSY  T +   + L + Q
Sbjct: 37  RVTKSHLQA--HNSTTSYGRTELSSSKKLWIRQ 67


>At5g13250.1 68418.m01522 hypothetical protein 
          Length = 286

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 222 QGWSSCSKIHQDYAKPDAEYRTQ 154
           QGW   S  H++  KPD ++R Q
Sbjct: 119 QGWLRLSLGHEEDVKPDLDHRQQ 141


>At3g23740.1 68416.m02985 expressed protein 
          Length = 542

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 198 IHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGS 79
           ++ + + PD E  TQ+ H++    +  GS+   SS L GS
Sbjct: 297 VNLEQSDPDKEQETQIKHVIPDTENNLGSEIPLSSPLVGS 336


>At3g04900.1 68416.m00532 heavy-metal-associated domain-containing
           protein contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 208

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 171 RLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAP 305
           RL    P V+  K   P P++ Y N  +     + +Y  +++P P
Sbjct: 160 RLKYEEPKVTPRKPPAPYPFDYYENLGFPPSDSLFNYFSDDNPQP 204


>At2g07300.1 68415.m00837 hypothetical protein 
          Length = 219

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 231 PMVQGWSSCSKIHQDYAKPDAEYRTQLHHIL 139
           P++ GW+ C  I + Y K   ++  +LH IL
Sbjct: 12  PLITGWTICVMILRIYKKMLNDHSFELHLIL 42


>At1g61540.1 68414.m06933 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 402

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 308 ILNCFSNIDQLYYENFSCI 364
           +LNCFS + +LYY   S +
Sbjct: 35  LLNCFSLVSRLYYPTLSLV 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,882,024
Number of Sequences: 28952
Number of extensions: 190114
Number of successful extensions: 525
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)