Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k18
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.5  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   5.8  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    21   7.7  

>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 106 SKTQNISPVNNN 71
           +KTQN +P NNN
Sbjct: 319 AKTQNATPANNN 330


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 106 SKTQNISPVNNN 71
           +KTQN +P NNN
Sbjct: 319 AKTQNATPANNN 330


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 668 LGQSEQPLRFYIPQFF 621
           +GQ E+P+ FY+   F
Sbjct: 301 MGQLEKPIVFYVANIF 316


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 487 YVRKMTICICDID 449
           +VR+ TIC  D+D
Sbjct: 96  FVRQFTICFDDVD 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,992
Number of Sequences: 336
Number of extensions: 3797
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)