Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k18
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    35   0.014
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    29   0.89 
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    28   1.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   1.2  
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    28   1.6  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   2.7  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    27   3.6  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   3.6  
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    26   4.8  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.3  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   8.3  

>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 34/152 (22%), Positives = 72/152 (47%), Gaps = 7/152 (4%)
 Frame = +2

Query: 56  SQKVAIIINGTNILGLAIVKALSEKLNGTVYFTASDEEEGLKATENFNNIGLYPKFLLAQ 235
           + KV  I  G   +GL++VK LS +  GT  F ++ + E     + ++      K +   
Sbjct: 4   TNKVYFIAGGNRGIGLSLVKELSSR-EGTTVFASARKPEAATELQEWSKSHPNVKTVELD 62

Query: 236 ITDKPALKKIADTIQMNHGSFDILINNTEDLKQCEDFPTYEEA-KNVIDSKYKSLLI--- 403
           +T + +  + A ++       D+L  N+     C+ + T  EA + V ++ Y++ ++   
Sbjct: 63  VTSQQSANEAAQSVAKAVDGIDVLWLNS---GICQSYYTVMEAPEEVWNAHYQTNVLGPI 119

Query: 404 -VEQYLFPLL--KDSGRVINVTNAYGHLSNIK 490
            V +  +PLL  K + +VI  ++  G + + +
Sbjct: 120 HVFKAFYPLLTKKKTRQVIFTSSECGSMGDFR 151


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +2

Query: 32  VAFGI*TMSQKVAIIINGTNILGLAIVKALSEKLNGTVYFTASDEEEGLKATENFNNIGL 211
           ++  + T S  +  +I  T+ LGLA +  L++             EE    T   +N+G+
Sbjct: 346 ISMAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNKLKPEEYQGGTFTISNLGM 405

Query: 212 YPKFLLAQITDKP 250
           +P      I + P
Sbjct: 406 FPVDQFTAIINPP 418


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
 Frame = +2

Query: 158 SDEEEGLKATENFNNIGLYPKFLLAQITDKPALKKIADTIQMNHGSFDILINNTEDLKQC 337
           S  EE  K  E+   + + P  L   ++D  ++  + +++       D+LINN       
Sbjct: 42  STVEEIAKELESKYEVSVLP--LKLDVSDLKSIPGVIESLPKEFADIDVLINNAGLALGT 99

Query: 338 EDF--PTYEEAKNVIDSKYKSLLIVEQYLFPLL--KDSGRVINVTNAYGHLSNIKNDKWI 505
           +       ++A  +I +    ++ + + + P+   K+ G ++NV +  G  S +    + 
Sbjct: 100 DKVIDLNIDDAVTMITTNVLGMMAMTRAVLPIFYSKNKGDILNVGSIAGRESYVGGSVYC 159

Query: 506 KTLTA 520
            T +A
Sbjct: 160 STKSA 164


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 693  LYLFCHTNVRAVRATIEILYSAIFPSSLNHFL 598
            L LFC T ++ VRA I++ +  + P++ N F+
Sbjct: 1450 LPLFCQTEMKIVRALIDLFH--LLPNNANRFM 1479


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 65  VAIIINGTNILGLAIVKALSEKLNGTVYFTA 157
           V +I+ G   +GL++VK LS K   TV+ +A
Sbjct: 8   VYVIVGGNRGIGLSLVKELSNKEGVTVFASA 38


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -3

Query: 659 SEQPLRFYIPQFFRHH*TIF-----YRTFHFLSFVNTPLQTNYQFVL 534
           + + +R+  P+FF  +  +         + F    NTPL TNYQ VL
Sbjct: 14  ASEGIRWLQPEFFSKYYPVLAVDGNLLLYRFFRSPNTPLHTNYQHVL 60


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -3

Query: 437 YLLVEETNTALQLTNFCTSSQ*HF*LLRKLENLHIVLSPPYYLLIYQSCHGSFELY 270
           ++ +    TA+++ +   SSQ       K  N H+  SP    L   SC+G    Y
Sbjct: 109 WIAIASDETAVKVVSSTDSSQIFSLRPAKASNKHVTYSPNGNFLAVSSCNGILYFY 164


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 212 YPKFLLAQIT-DKPALKKIADTIQMNHGSFDILIN 313
           +P F    IT DKP L     ++   H SFD + N
Sbjct: 721 FPSFTSNGITTDKPTLPDTTSSVPTQHNSFDAMHN 755


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 527 LTVEQIDNLFVEEYLRSLEN 586
           LTV+ ++N FVE Y  ++EN
Sbjct: 22  LTVQYVENHFVESYYPTIEN 41


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 566 YLRSLENGKFDKKWFSDDGKIAE-YKISMVARTALTFVWQN 685
           Y+R L +GK  KK     GK  E Y +  V    + F  QN
Sbjct: 263 YMRLLNSGKMQKKECDKKGKFFEAYAVDAVLCYTVAFHLQN 303


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 407 EQYLFPLLKDSGRVINVTNAYGHLSNIKNDKWIKTL 514
           + Y+ P+L     ++ +T  YG +S++   K I+ L
Sbjct: 99  DTYMTPILDSEANLLLLTQFYGKISSLFRSKIIQVL 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,718
Number of Sequences: 5004
Number of extensions: 63428
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)