Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k18
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    31   0.015
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.9  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   5.1  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   9.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 30.7 bits (66), Expect = 0.015
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
 Frame = +2

Query: 224 LLAQITDKPALKKIADTIQMNHGSFDILINN-TEDLKQCEDFPTYEEAKNVIDSKYKSLL 400
           L   ++++  + K+ + ++ N G+ DILINN T ++          + K + D     L 
Sbjct: 61  LQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLT 120

Query: 401 IVEQYLFPLLK----DSGRVINVTNAYG 472
            + Q +  L+K    ++G ++N+ +A G
Sbjct: 121 CMIQEVLKLMKKKGINNGIIVNINDASG 148


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 446 LYRYLLVEETNTALQLTNFCTSSQ*HF*LLRKLE 345
           L+R L  E T+  + + +FC +   HF + R+LE
Sbjct: 273 LFRPLSSEATDLRMGVASFCKAFPWHFVVDRQLE 306


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 500 ICHSLCSKDDHMHL*H 453
           ICH LC  D H  L H
Sbjct: 292 ICHILCMSDLHWQLPH 307


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 608 FSDDGKIAEYKISMVA--RTALTFVWQN 685
           F  D  +  + I  ++  +TA+T+VW+N
Sbjct: 193 FPFDDPLCSFAIESISYEQTAITYVWKN 220


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 608 FSDDGKIAEYKISMVA--RTALTFVWQN 685
           F  D  +  + I  ++  +TA+T+VW+N
Sbjct: 193 FPFDDPLCSFAIESISYEQTAITYVWKN 220


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 608 FSDDGKIAEYKISMVA--RTALTFVWQN 685
           F  D  +  + I  ++  +TA+T+VW+N
Sbjct: 244 FPFDDPLCSFAIESISYEQTAITYVWKN 271


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 608 FSDDGKIAEYKISMVA--RTALTFVWQN 685
           F  D  +  + I  ++  +TA+T+VW+N
Sbjct: 193 FPFDDPLCSFAIESISYEQTAITYVWKN 220


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 699 YFLYLFCHTNVRAVRATIEI 640
           YF++L+ ++ VR  R TIE+
Sbjct: 21  YFIFLYFNSLVRFRRFTIEL 40


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 417 KYCSTINKLLYFESITF 367
           KYC T    +Y  S+TF
Sbjct: 65  KYCETYKNSIYDVSMTF 81


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 440 GRVINVTNAYGHLSNIKNDK 499
           GR INV N Y + S    D+
Sbjct: 552 GRAINVANRYVYASQPDKDR 571


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,265
Number of Sequences: 438
Number of extensions: 3862
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)