Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k17
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 32 0.061
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 32 0.081
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 31 0.19
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 31 0.19
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 29 0.43
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.43
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 29 0.57
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 28 1.3
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 2.3
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 27 3.0
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 26 4.0
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 4.0
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 5.3
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 26 5.3
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 26 5.3
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 26 5.3
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 9.3
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.3
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 32.3 bits (70), Expect = 0.061
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 246 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKK 404
K +TV+GGG++G + V ++ G VT+V+ I LSR+ K
Sbjct: 218 KKMTVLGGGIIGLEMGSVWSRLGAEVTVVEFLPAVGGPMDADISKALSRIISK 270
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 31.9 bits (69), Expect = 0.081
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +3
Query: 249 NVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKS 371
+V +IGGG G+G+A ++ G NV L++ ++ A + KS
Sbjct: 69 DVLIIGGGATGTGVAVDASTRGLNVCLLEKTDFASETSSKS 109
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 30.7 bits (66), Expect = 0.19
Identities = 23/71 (32%), Positives = 31/71 (43%)
Frame = +3
Query: 213 FSSSSAMQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSR 392
F S NV V+G G + + Q + AG NVT+ S++ L AKK T+
Sbjct: 156 FGSKEHQVKPGNNVLVLGTGGVSTFALQFALAAGANVTVTSSSDEKLEFAKKLGATHTIN 215
Query: 393 VAKKMYKDNPQ 425
YK PQ
Sbjct: 216 -----YKKTPQ 221
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 246 KNVTVIGGGL-MGSGIAQVSAQAGQNVTLVDVSNDALAKAKK 368
KN V G +G IA AQAG NV + ++ D KAKK
Sbjct: 22 KNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKK 63
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 29.5 bits (63), Expect = 0.43
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 246 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAK 359
KNV VIGGG G A +++ G TL+ S D + +
Sbjct: 17 KNVVVIGGGHAGVEAAAAASRLGAKTTLLTKSFDNIGQ 54
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.43
Identities = 23/103 (22%), Positives = 49/103 (47%)
Frame = +3
Query: 324 TLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSA 503
TL D +ND K K +N S + K+ D+ ++ + + + L + + +A SK
Sbjct: 655 TLSDENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRK---SEEALRFSKLE 711
Query: 504 DLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEI 632
+ +++N++ KH+ + S A NT+++ +E+
Sbjct: 712 AKNLREVIDNLKGKHETLEAQRNDLHSSLSDAKNTNAILSSEL 754
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 29.1 bits (62), Expect = 0.57
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 201 IVRNFSSSSAM--QSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSI 374
I+RNF SSA+ QS++ NV V GG + ++ A L +V D K K
Sbjct: 581 IIRNFQFSSALKRQSSVSNVRVSGGSFK-TFVSVKGAPEVIATMLREVPKD-YEKIYKDY 638
Query: 375 GTNLSRVAKKMYK 413
G SRV YK
Sbjct: 639 GRKGSRVLALGYK 651
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +3
Query: 258 VIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALA--KAKKSIGTNLSRVAKKMYKDNPQEG 431
VIGGGL G G NV L+D N A K + G N + + +
Sbjct: 43 VIGGGLAGLSATNTILDLGGNVLLLD-KNTAFGGNSVKAASGINAAPTQLQFDQHVSDSV 101
Query: 432 EKFVNDSL 455
F NDS+
Sbjct: 102 NTFYNDSI 109
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 215 FKFLCNAKCYQECNGYWRWSNGL 283
F F+CNA Y N Y W+ L
Sbjct: 619 FYFVCNATSYSSLNPYGNWARPL 641
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +3
Query: 321 VTLVDVSNDALAKA--KKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEAS 494
+T V + LA+A K I + + K K P+E E F+ L N + E
Sbjct: 861 ITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKG 920
Query: 495 KSADLVVEAIVENIEVKHKLFKQL 566
+ D + I+ + + +LFKQ+
Sbjct: 921 ELDDDELNEILARGDDELRLFKQM 944
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 339 SNDALAK---AKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADL 509
S DA+ K A K+ NL +V+ D P+ F ND + + +T A +K AD
Sbjct: 254 STDAVPKKLDASKASSLNLEKVS--YLTDEPKFRFDFNNDEMAVVKLSTGIAAFAKDADT 311
Query: 510 VVEAIVENIE 539
+ + +E
Sbjct: 312 LRTILKAKLE 321
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 203 RKKFFKFLCNAKCY 244
RK+FF FL N +CY
Sbjct: 629 RKRFFDFLVNTQCY 642
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 234 QSAIKNVTVI--GGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIG 377
QS ++ +I GGG++G + V+A + + + + LA SIG
Sbjct: 101 QSCTRDTILIAMGGGVIGDLVGYVAASFMRGIRFIQMPTTLLAMVDSSIG 150
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 450 SLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPS 584
SLG +++A D SAD + E + + + H L K L A S
Sbjct: 430 SLGLVSSALDKITGLLSADNLSETVSQARDFSHTLSKSLKSRAKS 474
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +3
Query: 384 LSRVAKKMYKDNPQEGEKFV--NDSLGRINTATDAA--EASKSAD 506
+S++A+ NP + E+FV D+LG D+ EAS AD
Sbjct: 102 ISKIAEAAQASNPDDEEEFVMEEDNLGEAPLLVDSESYEASVKAD 146
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 279 GSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRV 395
GS + + A + +SND+LAKA S+ T++S++
Sbjct: 317 GSFTTHLDSNASMAKSFSQISNDSLAKA-SSVATSMSQM 354
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 359 SQEEHWHKPQQGRKEDVQR*SPRRREICE 445
+QE+ W K +Q KE+++R RREI E
Sbjct: 19 NQEKVW-KDEQAHKEEMKRVEQLRREIEE 46
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/70 (21%), Positives = 34/70 (48%)
Frame = +3
Query: 333 DVSNDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADLV 512
++SN + + S+G + + + Y + ++V DS+ R++ A + +D +
Sbjct: 365 EISNLRVLAVENSLGNLIQKAEESNYDQAIMDLFEYVKDSILRVHER--AIKLRTLSDSI 422
Query: 513 VEAIVENIEV 542
+ ENIE+
Sbjct: 423 RADVAENIEM 432
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,902
Number of Sequences: 5004
Number of extensions: 45400
Number of successful extensions: 126
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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