Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k17
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)                   32   0.34 
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)     32   0.46 
SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27)           31   0.80 
SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)                   30   1.8  
SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)          29   2.4  
SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)               29   4.2  
SB_51079| Best HMM Match : zf-C3HC4 (HMM E-Value=0.19)                 29   4.2  
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)                       29   4.2  
SB_12862| Best HMM Match : Ribosomal_S6 (HMM E-Value=3)                29   4.2  
SB_63| Best HMM Match : RVT_1 (HMM E-Value=0)                          28   5.6  
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)           28   7.4  
SB_31176| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)                     27   9.8  

>SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 44/129 (34%), Positives = 76/129 (58%)
 Frame = +3

Query: 243 IKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNP 422
           + +V V+G GLMG+G+ QVS Q   +V + D   + LA+     GT      +++YK   
Sbjct: 182 VNSVAVLGAGLMGAGVVQVSLQKFPHVIMKDNVIEGLAR-----GT------QQIYKGF- 229

Query: 423 QEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFAS 602
            E ++ ++   G+I+      +  + AD+V+EA+ E++ +KHK+ K+++   P H +FAS
Sbjct: 230 -ERDRILSSLDGQIDY-----KGFEKADMVIEAVFEDLGIKHKVIKEVEQYIPEHCVFAS 283

Query: 603 NTSSLSINE 629
           NTSSL I +
Sbjct: 284 NTSSLPITQ 292


>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 812

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 43/135 (31%), Positives = 68/135 (50%)
 Frame = +3

Query: 231 MQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKKMY 410
           MQ    +V VIG GLMG+ IA   A  G  V L D S  A+ K+K+ +        K+  
Sbjct: 1   MQQEEPSVAVIGAGLMGTCIAGELAYHGARVNLYDRSAQAMEKSKEMLIQQ-----KEQL 55

Query: 411 KDNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHT 590
           K   +E     +D +G +       EA  ++ L+ EA +EN+EVK  +FK +     ++ 
Sbjct: 56  K---REEVMATSDFIGTVAFCESLEEAVVNSGLIFEATIENLEVKKSVFKSISQFCRTNA 112

Query: 591 IFASNTSSLSINEIA 635
           + A+NT +L  + +A
Sbjct: 113 VIATNTLALDTSVVA 127


>SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = +3

Query: 429 GEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAP 581
           G+ FV  ++ R+  + D   +   ADLV+EAIVEN+  KHKLF  LD  AP
Sbjct: 2   GKTFVAGTMSRLKISLDVPGSVADADLVIEAIVENLRTKHKLFTALDEAAP 52


>SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)
          Length = 993

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
 Frame = +3

Query: 342 NDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEA 521
           N AL +AK     N  +VA +  ++NP+E  K +N+ LGR N+        K  D  + +
Sbjct: 708 NIALQQAKSDFYRN--KVASQ--ENNPKEAWKTINNLLGR-NSGQSVVNEQKINDQSISS 762

Query: 522 IVENIEVKHKLFKQL-----DGVAPSHTIFASNTSSLSIN 626
             E  E  +  F  +     + + P++T F S   S  +N
Sbjct: 763 PEEIAEAFNSYFSNIGPNLANSMPPTNTSFESFVESCQVN 802


>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
          Length = 2022

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
 Frame = +3

Query: 162  NL*IDSKMMQFKVIVRNFSSSSAMQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVS 341
            +L +D ++MQF  I  N  + +  +    N    G  ++             +  +  V 
Sbjct: 1317 DLHLDERIMQFLSICNNMFTRADRKMISDNAIRTGRKMISDNAIHTGRNMINDNAICTVG 1376

Query: 342  N----DALAKAKKSIGTNLSRVAKKMYKDNP-QEGEKFVNDS 452
            N    +A+   +K I  N  R  +KM  DN  + G K ++D+
Sbjct: 1377 NMISDNAIRTGRKMISDNAIRTGRKMISDNAIRTGRKMISDN 1418


>SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27)
          Length = 440

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +3

Query: 147 LFYKPNL*IDSKMMQFKVIVRNFSSSSAMQSAIKNVTVIGGGLMGSGIA-QVSAQAGQNV 323
           +F K +  I  K+  F+  V +F     +    K++ +IGGG +GS +A  +  + G  V
Sbjct: 244 IFEKSSNNIKKKVTLFRK-VEDFQLLDKITKGAKSIVIIGGGFLGSELACALGHKEGVKV 302

Query: 324 TL-VDVSNDALAKAKKSIG 377
              V V N +L K + ++G
Sbjct: 303 VPGVSVENVSLKKNQLALG 321


>SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)
          Length = 280

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 204 VRNFSSSSAMQSAIKNVTVIGGGLMGSGIA 293
           +R FSSSS   S   +V ++GGG+MGS  A
Sbjct: 89  MRCFSSSSRNVSKEFDVVIVGGGVMGSSSA 118


>SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)
          Length = 387

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 228 AMQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVD 335
           ++ +  KN+ +IG G++G  +  V ++ G NVT V+
Sbjct: 106 SLSTVPKNLVLIGAGVIGVELGSVWSRLGANVTAVE 141


>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
          Length = 120

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 516 EAIVENIEVKHKLFKQLDG-VAPSHTIFASNTSSL 617
           E   EN+E+K K+F+ L+  ++ S  I AS+TS +
Sbjct: 1   ECTPENLELKKKVFQNLEATLSSSEVILASSTSCI 35


>SB_51079| Best HMM Match : zf-C3HC4 (HMM E-Value=0.19)
          Length = 337

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 227 CNAKCYQECNGYWRWSNGLRHSPGICPSRTECYP 328
           C   C+Q+C  +W+W++  R     CP     +P
Sbjct: 51  CGQVCHQQC--FWKWAHYHRTEAVTCPHCRHVFP 82


>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
          Length = 485

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 210 NFSSSSAMQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSND 347
           N ++ S  + + + V ++GGGL+G+  A   A+ G  V L +   D
Sbjct: 152 NMANLSEDEKSRREVAIVGGGLVGALSAVFFAKRGYKVDLYESRQD 197


>SB_12862| Best HMM Match : Ribosomal_S6 (HMM E-Value=3)
          Length = 224

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 342 NDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGR 461
           N AL +AK +   N  ++A++   DNP+E  K +ND LGR
Sbjct: 80  NIALREAKSNYYKN--KIAQE--HDNPKEAWKIINDLLGR 115


>SB_63| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 680

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = +3

Query: 342 NDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAE 488
           N AL +AK +   N  ++A +  K+NP+E  K +N  LGR    T A E
Sbjct: 70  NIALRQAKSNYYRN--KIANQ--KNNPKEAWKTINSLLGRTKENTTANE 114


>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
          Length = 1541

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 327  LVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINT 470
            L++V ++   K+ K  GT+      K Y  + Q G KF+  S+ R+ T
Sbjct: 1375 LMNVFSEGDEKSSKLTGTDFVPFVIKHYGKSLQNGNKFIYQSMPRLLT 1422


>SB_31176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 478 SVAVLILPSESFTNFSPSWG 419
           ++++L L  E FTNF PSWG
Sbjct: 25  NLSLLGLSGEVFTNFLPSWG 44


>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
 Frame = +3

Query: 252 VTVIGGGL-MGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQE 428
           VT  G  + +GSG A V+   G  V  +   +  +  A  S+GT    +    Y + P  
Sbjct: 277 VTTTGAPVSIGSG-ATVAIPQGVTVQAIRPPSMTVTVAS-SLGTPTYAIPISQYANAPIL 334

Query: 429 GEKFVNDSLGRINTATDA--AEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFAS 602
               +N+ +     A+    AE +  A LVV A   NI+ +H+ F  L     S     S
Sbjct: 335 VATGMNNLIPSTLVASTEHNAEKANEAGLVVVAAPNNIQSQHEGFNSLTEGDGSDEEARS 394

Query: 603 NTSSLSINEIAS 638
           N  + + N I +
Sbjct: 395 NAGTPNANAIVN 406


>SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)
          Length = 197

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 441 VNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGV 575
           VN +  RIN  T     +    +     VE+I+  HKL ++ DG+
Sbjct: 113 VNSTSLRINCTTLPTSVANGYVIAFNVYVESIDGSHKLIEKKDGL 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,363,876
Number of Sequences: 59808
Number of extensions: 343043
Number of successful extensions: 974
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)