Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k16
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    29   0.66 
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   2.7  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.7  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   4.7  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   4.7  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   6.2  

>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
 Frame = +2

Query: 86  ITKQNGP*AENAYRQRDRQ*KHHNEGECTQNY*GKRRPISCGTLAPCSLHLRSVWLCCVP 265
           +TK   P ++ A +  D   +H N+G  T  Y G   P+     +   L    V  C   
Sbjct: 46  VTKAYYPSSQQALKLYDLLREHRNKGTATLTY-GVVDPVLASQASKAGLETIFVSGCLCG 104

Query: 266 DNPINKTSLNHED-NWRT---AIENTIK*QHYPSKVKAQF 373
            + +++  ++H D  W T   A++   + Q++ ++ + QF
Sbjct: 105 LSSVDEPGMDHADYPWDTVPKAVDRIFRSQNWHARRQKQF 144


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 188 KRRPISCGTLAPCSLHLRSVWLCCVPDNPINK 283
           ++R I C  L PC   ++S   C  P++PI +
Sbjct: 23  RQRKIKCDRLHPCFQCVKSNSQCFYPEDPIRR 54


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 217 QGATGYWSSFSLVVLGTFPLIVMFLLA 137
           Q  TG W+   +V+   F ++V+FLLA
Sbjct: 146 QNVTGNWTWAHVVICYVFNVLVLFLLA 172


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 269 YLEH-SRATHYEDEESKEP 216
           Y EH +  +HYE+EE +EP
Sbjct: 782 YFEHETEPSHYEEEEEEEP 800


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +2

Query: 200 ISCGTLAPCSLHLRSVWLCCVPDNPINKTSLNHED 304
           I CG LA   + L  V L  VPDNP     L  ED
Sbjct: 227 IICGVLA---IFLGFVILAVVPDNPFKAWFLTEED 258


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 601 WNLWLELSLKIILKKRQKFIE 539
           WN+WL    KI  K++ KF E
Sbjct: 370 WNMWLSQVQKINEKEKDKFYE 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,807
Number of Sequences: 5004
Number of extensions: 59255
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)