Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k13
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    32   0.33 
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    32   0.33 
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    32   0.44 
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    30   1.8  
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    28   5.4  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    28   5.4  
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ...    27   9.5  
At1g64260.1 68414.m07281 zinc finger protein-related contains Pf...    27   9.5  

>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +2

Query: 98  ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 265
           +L  +  NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R
Sbjct: 285 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +2

Query: 98  ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 265
           +L  +  NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R
Sbjct: 286 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 245 LIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNF 343
           +++D +    EY  KL + +G +   KYFPL F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 71  MLAASAGVVELSADTSNQDLEEKLYNSILTGDYD 172
           +LA + G  ELS   + Q++E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSPSPAEQEIESFLYNAINMGFFD 103


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 137 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 253
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 137 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 253
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +3

Query: 45  NFSLYLRCACSPPAR--ASLN---YPRTLLTKTSRRNCTT 149
           NFSL L+C   PP +    LN   +P TL+ K+    CTT
Sbjct: 228 NFSLDLQCVFHPPKQNPHDLNIHDHPLTLMPKSISFTCTT 267


>At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam
           profiles PF03108: MuDR family transposase, PF04434: SWIM
           zinc finger
          Length = 719

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 245 LIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNF 343
           +++D +    +Y  KL + +G +   K+FPL F
Sbjct: 379 IVVDTKSLNGKYQLKLMIASGVDAANKFFPLAF 411


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,683,881
Number of Sequences: 28952
Number of extensions: 296682
Number of successful extensions: 798
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)