Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k09
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   184   5e-48
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    29   0.53 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.92 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   1.2  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   2.8  
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.7  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.7  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   4.9  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   6.5  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   8.6  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   8.6  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  184 bits (449), Expect = 5e-48
 Identities = 87/110 (79%), Positives = 101/110 (91%)
 Frame = +2

Query: 134 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRK 313
           +K Q   S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 314 TPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 463
           TP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIA
Sbjct: 68  TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 251 KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 403
           K+ +KGP  +P K+   T  ++P    S + + F+   H R+I L+S + +
Sbjct: 92  KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 116  VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 265
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 107 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 205
           A V +  D+EKPQ +V+   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 251 KLRVKGPVRMPTKI---LRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITS 421
           K R  G +  P  +   LR    KT  G G    +    ++  R+ DLH   E   +I +
Sbjct: 785 KSRENGTIPRPLYVISHLRPLLHKTSLGVGDILLE-VNGKMITRLSDLHE-FETESEIKA 842

Query: 422 INIEPGVEVEVTI 460
           + +  G+E+E+TI
Sbjct: 843 VILRDGIEMEITI 855


>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 313 NSLW*RFKDLGSFSDENPQESDRPTL 390
           N+ W RFK+ G + DE+  E + P+L
Sbjct: 35  NNEW-RFKNAGEYFDEDNNEEEYPSL 59


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 356 MRIHKRVIDLHSPSEIVKQITSINIEPGV 442
           +R+H+R I L + S+ ++   + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 88  IPAEINNFSIKNCSALNRRNL 26
           + +E+N+  IKN S LN RNL
Sbjct: 592 LESELNSSKIKNESLLNERNL 612


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 387 CRSITLLWILI*KRSQVFEPSPQ 319
           C +  L W+   KRSQ   PSP+
Sbjct: 331 CLNFALAWMFEFKRSQYSNPSPE 353


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 308 RKTPCGEGSKTWDRFQM 358
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 262  KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDENPQESD 378
            K P+ +ANQ P   +  N+ W +    G FS+ N    D
Sbjct: 916  KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,062
Number of Sequences: 5004
Number of extensions: 43293
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)