Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k09
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 6e-42
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 31 0.41
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 30 1.3
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35) 29 2.2
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 28 5.1
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 167 bits (405), Expect = 6e-42
Identities = 79/95 (83%), Positives = 88/95 (92%), Gaps = 2/95 (2%)
Frame = +2
Query: 191 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRI 364
+ VR+ KV CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6 KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65
Query: 365 HKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 469
HKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 66 HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 31.5 bits (68), Expect = 0.41
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 196 CALAREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 309
C A GLC P + ++ + GPSP + DP+ P
Sbjct: 414 CLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 125 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 226
+ + K Q E + IH + +T ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696
>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
Length = 1049
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = -1
Query: 490 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHDFRGRV*VDHSLVDSHLK 350
FY L L V D L G+D DLF + R VD+SLV +K
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMK 448
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 265 GPSPHANQDPAYHHP 309
GP PH+ Q P HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203
>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +1
Query: 160 YPPHQDHSYFTQCALAR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 309
Y P +SY CA + +G + A+ + PH N DPA+ P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319
>SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 27.1 bits (57), Expect = 8.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 497 KNILLAALPTRRRWSPQP 444
+N+++ LPT +RW P P
Sbjct: 180 RNVVIQRLPTSQRWQPYP 197
>SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 275 RMPTKILRITT-RKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 403
R+PT + T +K PC TW R + KR + +H P+ +
Sbjct: 22 RVPTAFPSVATGKKYPCQRKKVTWSR-KKNPFKRRVPVHVPTSL 64
>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 92 TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 214
T N A+ ++S + +PQA + P+H I + SRN ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343
>SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 27.1 bits (57), Expect = 8.9
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +2
Query: 119 SGKDIEKPQAEVSPIHRIRITLTSR-NVRSLEKVCADLINGAKKQKLRVKGPVRMPTKIL 295
S + +K +VSP+ RI+ TSR ++ S DL + K K K P+ P
Sbjct: 124 STRSSKKDPDKVSPLSRIKSPATSRVSLDSDSDDGNDLPSVFTKTKPVWKPPITTPQVNS 183
Query: 296 RITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSIN 427
P + + D ++R HKR+ D +S ++ S N
Sbjct: 184 DSEEEDLPSYLSTNSQDT-KIRTHKRIADNNSKISCRSKVDSQN 226
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,072,313
Number of Sequences: 59808
Number of extensions: 357456
Number of successful extensions: 802
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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