Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k09
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ... 176 6e-45
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ... 176 6e-45
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo... 174 2e-44
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ... 174 2e-44
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,... 57 6e-09
At1g20530.1 68414.m02558 hypothetical protein 29 1.4
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2... 28 4.2
At3g06960.2 68416.m00827 expressed protein 28 4.2
At3g06960.1 68416.m00826 expressed protein 28 4.2
At3g18310.1 68416.m02330 expressed protein 27 7.3
At5g27220.1 68418.m03247 protein transport protein-related low s... 27 9.6
>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 176 bits (429), Expect = 6e-45
Identities = 78/109 (71%), Positives = 97/109 (88%)
Frame = +2
Query: 143 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 322
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73
Query: 323 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 469
GEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 176 bits (429), Expect = 6e-45
Identities = 78/109 (71%), Positives = 97/109 (88%)
Frame = +2
Query: 143 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 322
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73
Query: 323 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 469
GEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
Length = 124
Score = 174 bits (424), Expect = 2e-44
Identities = 77/103 (74%), Positives = 94/103 (91%)
Frame = +2
Query: 161 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 340
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 341 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 469
WDRF++R+HKRVIDL S ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 82 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
Length = 124
Score = 174 bits (424), Expect = 2e-44
Identities = 77/103 (74%), Positives = 94/103 (91%)
Frame = +2
Query: 161 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 340
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 341 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 469
WDRF++R+HKRVIDL S ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 82 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
putative similar to 30S ribosomal protein S10 GB:P02364
[Escherichia coli] (est matches suggest the N-terminal
extension)
Length = 191
Score = 57.2 bits (132), Expect = 6e-09
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Frame = +2
Query: 104 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 283
A+ V S I +++P +IRI L S V +E C +++ A+ + GPV +P
Sbjct: 73 ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLP 132
Query: 284 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVID-LHSPSEIVKQITSINIEPGVEVEVTI 460
TK K+P + F++R H+R+ID L+ ++ + + +++ GV+VEV +
Sbjct: 133 TKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191
>At1g20530.1 68414.m02558 hypothetical protein
Length = 614
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 383 GRSLSCGFSSENDPRSLNLHHKEFYGW*YAGSWLACGLGPLHAASVSW 240
G +C S + P SLNL+H FY Y + P ++ +W
Sbjct: 106 GEGTNCDLLSGSKPESLNLNHDSFYSRRYESGTITPPPPPPAPSNYAW 153
>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
HD-ZIP protein 2 identical to homeobox-leucine zipper
protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
SP:P46601; contains Pfam profiles PF04618: HD-ZIP
protein N terminus, PF02183: Homeobox associated leucine
zipper, PF00046: Homeobox domain
Length = 283
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 395 RESVGRSLSCGFSSENDPRSLNLH 324
+E +G SLS GFS ++P +NL+
Sbjct: 5 KEDLGLSLSLGFSQNHNPLQMNLN 28
>At3g06960.2 68416.m00827 expressed protein
Length = 341
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 171 MRWIGETSAWGFSMSLPDT 115
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At3g06960.1 68416.m00826 expressed protein
Length = 479
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 171 MRWIGETSAWGFSMSLPDT 115
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At3g18310.1 68416.m02330 expressed protein
Length = 873
Score = 27.1 bits (57), Expect = 7.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 235 WSQETEAACKGPSPHANQDPA 297
W+ +++ C GPSP +DP+
Sbjct: 400 WNAQSQMFCFGPSPSVGKDPS 420
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = -1
Query: 211 LERAH--IA*SKSDPDAVDRGDLCL 143
++R H +A +K DPD+V RG +CL
Sbjct: 691 IQRLHEKMAVTKLDPDSVRRGSICL 715
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,203,336
Number of Sequences: 28952
Number of extensions: 243963
Number of successful extensions: 569
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -