Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k08
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12290| Best HMM Match : MFS_1 (HMM E-Value=9.6e-16) 128 6e-30
SB_16303| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 8e-27
SB_17852| Best HMM Match : MFS_1 (HMM E-Value=0.00068) 93 2e-19
SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26) 73 2e-13
SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07) 59 3e-13
SB_51537| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_31394| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_36475| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092) 33 0.18
SB_43984| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_32467| Best HMM Match : MFS_1 (HMM E-Value=0.41) 32 0.40
SB_2193| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.00071) 31 0.71
SB_53973| Best HMM Match : TP2 (HMM E-Value=8.2) 31 0.93
SB_40774| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_39460| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_14844| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058) 30 2.2
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07) 29 3.8
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_55040| Best HMM Match : TatC (HMM E-Value=0.59) 29 5.0
SB_35463| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_39495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_52111| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_45061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_16913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_2168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_12290| Best HMM Match : MFS_1 (HMM E-Value=9.6e-16)
Length = 432
Score = 128 bits (308), Expect = 6e-30
Identities = 71/191 (37%), Positives = 103/191 (53%), Gaps = 13/191 (6%)
Frame = +2
Query: 155 RHLQTAMLFLAMVLAYGMRVNISMAIVAMTDKDN----------EDSFNWSMQTQSVILS 304
R++ AM +L + Y MRVN+++AIV M + + FNW Q ++L
Sbjct: 114 RYVLLAMTWLGFINIYSMRVNLNVAIVGMVNDQTISKGRLHFIKKAEFNWDSALQGLVLG 173
Query: 305 SFFWGYVVLQIPGGELAAKFGGKILVIISLGVNSVVSMLIPLAAYYGGWQAVCACRVLQG 484
SFF+GY VLQIPG LA + GG + + V S++++L P+A Y W V R+ QG
Sbjct: 174 SFFYGYWVLQIPGAWLAMRIGGTRVFGYGVFVTSLLALLTPVATRYSVWGLV-GVRIFQG 232
Query: 485 LSQGFTYPSIHNLIGKWVPLEEKSRLGTIIYAGGQLGTALQLMASGFIAQY---WGWPAI 655
L G T+P H + KW P E+S L TI AG G + + +G +++Y GWP++
Sbjct: 233 LFLGVTFPCNHAIWSKWAPPFERSTLITISIAGCPFGNIVAIPLTGLLSKYGFDGGWPSV 292
Query: 656 FYVNGALGAIW 688
FY G G IW
Sbjct: 293 FYCFGTSGIIW 303
>SB_16303| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 117 bits (282), Expect = 8e-27
Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 5/189 (2%)
Frame = +2
Query: 155 RHLQTAMLFLAMVLAYGMRVNISMAIVAMTDKDNEDSFNWSMQTQSVILSSFFWGYVVLQ 334
+ + A +F+ +L Y R I + + AM+ KD W + ++S+FFWGY Q
Sbjct: 22 KRIWIASMFIGTMLLYSARSAIPLCMAAMS-KD----LAWDKEADGAVMSAFFWGYTPAQ 76
Query: 335 IPGGELAAKFGGKILVIISLGVNSVVSMLIPLAA-----YYGGWQAVCACRVLQGLSQGF 499
I GG L+ K+GG++++ + + S ++ +P ++ V RV+ GLSQG
Sbjct: 77 IVGGYLSDKYGGEVVLGYAAIIWSFCTLAVPFLPGKAFLFFPPIVMVILSRVVTGLSQGL 136
Query: 500 TYPSIHNLIGKWVPLEEKSRLGTIIYAGGQLGTALQLMASGFIAQYWGWPAIFYVNGALG 679
YPS+ N+I K +PL+E++ L + +++ G +GT + I Y+GWP++F GA G
Sbjct: 137 HYPSLTNIIAKRIPLKERTLLTSSVFSAGPVGTLVMGSVGSVILMYFGWPSVFLAQGAAG 196
Query: 680 AIWTAFYVF 706
+W + F
Sbjct: 197 LLWAWLWTF 205
>SB_17852| Best HMM Match : MFS_1 (HMM E-Value=0.00068)
Length = 256
Score = 93.1 bits (221), Expect = 2e-19
Identities = 48/177 (27%), Positives = 92/177 (51%), Gaps = 3/177 (1%)
Frame = +2
Query: 179 FLAMVLAYGMRVNISMAIVAMTDKDNEDSFNWSMQTQSVILSSFFWGYVVLQIPGGELAA 358
+L ++A + ++ I+ + + W+ + ++LSSFFWGY++ QIPGG L+
Sbjct: 37 WLITLMASTASIYVTRIIMPLCEPTLALDMGWNKRESGLVLSSFFWGYLITQIPGGFLSD 96
Query: 359 KFGGKILVIISLGVNSVVSMLIPLAA---YYGGWQAVCACRVLQGLSQGFTYPSIHNLIG 529
+G + L++ ++ S+ +++IPL A V R+ G+ QG YPS+++L+
Sbjct: 97 VYGAERLLLWAVTGCSLSTLVIPLVASQKVTSPITLVLISRLALGVFQGIYYPSLYSLLA 156
Query: 530 KWVPLEEKSRLGTIIYAGGQLGTALQLMASGFIAQYWGWPAIFYVNGALGAIWTAFY 700
K +P+ E+S AGG +G+ + + GW +F G++G +W +
Sbjct: 157 KSLPISERSSCSAFALAGGPVGSLVIGGLGSLVLARCGWRWVFLSFGSIGLLWAVLW 213
>SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)
Length = 473
Score = 72.9 bits (171), Expect = 2e-13
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 10/195 (5%)
Frame = +2
Query: 155 RHLQTAMLFLAMVLAYGMRVNISMAI-------VAMTDKDNEDSFNWSMQTQSVILSSFF 313
R++ ++F Y +RVN+++AI V M + + + + V+L SF+
Sbjct: 14 RYILACLIFWGFFTMYALRVNLNVAIGAMVKPHVVMVEGRAVIKVSVLVAVEGVVLGSFY 73
Query: 314 WGYVVLQIPGGELAAKFGGKILVIISLGVNSVVSMLIPLAAYYGGWQAVCACRVLQGLSQ 493
+GYV LQ+ GG LA K G L ++ V S++++L PLAA G + A R+L+GL
Sbjct: 74 YGYVALQLLGGWLAIKIGATRLYGAAILVASLLTLLTPLAA-RGSPYLLVALRMLEGLV- 131
Query: 494 GFTYPSIHNLIGKWVPLEEKSRLGTIIYAGGQLGTALQLMASGFIAQY---WGWPAIFYV 664
++ I + E+ T+ + +G+ + +G + +Y GW ++FY
Sbjct: 132 -LAARMLNAAILSAIMFEKV----TVENSRCTVGSVATMPITGMLTKYGFDGGWASVFYC 186
Query: 665 NGALGAIWTAFYVFL 709
GA G +W +V L
Sbjct: 187 FGAFGVLWYIMWVLL 201
>SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)
Length = 349
Score = 59.3 bits (137), Expect(2) = 3e-13
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +2
Query: 245 DKDNEDS-FNWSMQTQSVILSSFFWGYVVLQIPGGELAAKFGGKILVIISLGVNSVVSML 421
D ED F W TQ ++L +FF+GY+V Q+PGG LA +GGK + + + ++ ++L
Sbjct: 91 DHTLEDGPFKWDQDTQGLVLGAFFYGYLVTQLPGGWLAGHYGGKSVFGLGVFFTAIFTLL 150
Query: 422 IPLAA 436
P+AA
Sbjct: 151 TPIAA 155
Score = 33.5 bits (73), Expect(2) = 3e-13
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 155 RHLQTAMLFLAMVLAYGMRVNISMAIVAMTDKDNEDS 265
R++ M F V YGMR N+S+A+VAM ++ +S
Sbjct: 34 RNVLVLMQFAGFVTVYGMRANLSVALVAMVNQTYANS 70
>SB_51537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/93 (35%), Positives = 50/93 (53%)
Frame = +2
Query: 293 VILSSFFWGYVVLQIPGGELAAKFGGKILVIISLGVNSVVSMLIPLAAYYGGWQAVCACR 472
++L SF++GY VLQIP G K GGK + + V SV++++ P +C R
Sbjct: 2 LVLGSFYYGYAVLQIPAGWAVLKIGGKPIFGFGILVASVLALVTPPIVKQSFIVFIC-LR 60
Query: 473 VLQGLSQGFTYPSIHNLIGKWVPLEEKSRLGTI 571
+ QGLS G + H + W P+ E++ L TI
Sbjct: 61 IAQGLSLGLIASAHHCIWATWSPIFERASLLTI 93
>SB_31394| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/66 (43%), Positives = 40/66 (60%)
Frame = +2
Query: 293 VILSSFFWGYVVLQIPGGELAAKFGGKILVIISLGVNSVVSMLIPLAAYYGGWQAVCACR 472
+IL SF++GY+V QIPGG LA K GG L + S +++ PLAA A+ R
Sbjct: 2 IILGSFYYGYMVFQIPGGWLAMKLGGAKLFGFGIFSASFLTLFTPLAARCSP-IALIILR 60
Query: 473 VLQGLS 490
VL+GL+
Sbjct: 61 VLEGLA 66
>SB_36475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +2
Query: 506 PSIHNLIGKWVPLEEKSRLGTIIYAGGQLGTALQLMASGFIAQYWGWPAIFYVNGALGAI 685
P++++ + P EKS T +G +G A+ G + ++ WP+IFY +GA+ I
Sbjct: 3 PALYDFWNRRAPYGEKSTYVTFSLSGLYIGLAIIPPVLGQLESWFDWPSIFYSSGAV-TI 61
Query: 686 WTAFYVFL 709
AF F+
Sbjct: 62 LLAFVWFI 69
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 155 RHLQTAMLFLAMVLAYGMRVNISMAIVAM 241
R+ + LA +L+YG+R I +A+VAM
Sbjct: 351 RYCIVFLTMLAFLLSYGVRAGIGIAVVAM 379
>SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)
Length = 676
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 581 GGQLGTALQLMASGFIAQYW---GWPAIFYVNGALGAIW 688
G +GT + + SG + +Y GW ++FY GA G +W
Sbjct: 381 GCHVGTIITMPLSGLLTKYGFDGGWASVFYCFGAAGILW 419
>SB_43984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +2
Query: 323 VVLQIPGGELAAKFGGKILVIISLGVNSVVSMLIPLAA 436
++ Q+PGG LA +FGG++++ + +S+ L P+AA
Sbjct: 1 MLTQVPGGMLAQRFGGRVVLGSCMLFSSIFVFLSPVAA 38
>SB_32467| Best HMM Match : MFS_1 (HMM E-Value=0.41)
Length = 366
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 155 RHLQTAMLFLAMVLAYGMRVNISMAIVAM 241
R+L + L YGMRVN+S+A+VAM
Sbjct: 53 RYLVAVLALLGFANVYGMRVNLSVALVAM 81
>SB_2193| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.00071)
Length = 482
Score = 31.5 bits (68), Expect = 0.71
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 306 RSFGATWCCRYLVENWQLNSEEKSWSSFHLVSILLFPCS 422
R + W CR ++ W K W L+++L PCS
Sbjct: 384 RDYIKQWLCRDYIKQWLCRDYIKQWLCRSLMTVLATPCS 422
>SB_53973| Best HMM Match : TP2 (HMM E-Value=8.2)
Length = 185
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 155 RHLQTAMLFLAMVLAYGMRVNISMAIVAM 241
R++ M+FL + + Y +RVN+S+AI AM
Sbjct: 35 RYIVAIMVFLGICVQYALRVNLSVAIGAM 63
>SB_40774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 155 RHLQTAMLFLAMVLAYGMRVNISMAIVAM 241
R++ M+FL + + Y +RVN+S+AI AM
Sbjct: 35 RYIVAIMVFLGICVQYALRVNLSVAIGAM 63
>SB_39460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 155 RHLQTAMLFLAMVLAYGMRVNISMAIVAM 241
R++ M+FL + + Y +RVN+S+AI AM
Sbjct: 35 RYIVAIMVFLGICVQYALRVNLSVAIGAM 63
>SB_14844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Frame = +2
Query: 155 RHLQTAMLFLAMVLAYGMRVNISMAIVAM----------TDKDNEDSFNWSMQTQ 289
R+ + LA +L+YG+R IS+A+VAM T + F WS +TQ
Sbjct: 108 RYCIAFLTMLAFLLSYGVRAGISIAVVAMVSSRETTINGTITVKDPEFRWSTKTQ 162
>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
Length = 1299
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 483 PWSTRQAHTACHXXXXXANGMSMETTELTPSEMMTRI---FPPNLAASSPPGICSTT*PQ 313
P TRQ HT+ A S + L P + T P+L A+ P + + P+
Sbjct: 771 PVITRQPHTSVIAARKAAESSSAQQPPLHPDLLETTTATNVTPSLPATKPTKVAPSPEPK 830
Query: 312 KNEERITLW 286
+ E +IT W
Sbjct: 831 RREIKITAW 839
>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 506 PSIHNLIGKWVPLEEKSRLGTIIYAGGQLG 595
P + L +WV + K ++ I+YAG QLG
Sbjct: 897 PVLFELFKEWVKMAAKHKIEYILYAGTQLG 926
>SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)
Length = 721
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 138 MQSWV-FGIFKLQCYSWQWCWHMEC 209
M+SWV +GI + SW W W C
Sbjct: 1 MESWVGYGIVGVSINSWVWVWSRGC 25
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 340 WWRTGS*IRRKNPGHHFTWCQFCCFHAHTVSSLLWWMAG 456
W+R+ S ++ +N F WC+F + S+LW +AG
Sbjct: 766 WYRSVS-VKSRNEALSFVWCRF--ISGLCIYSILWQIAG 801
>SB_55040| Best HMM Match : TatC (HMM E-Value=0.59)
Length = 275
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +2
Query: 524 IGKWVPLEEKSRLGTIIYAGGQLGTALQLMASGFIAQYWGWPAIFYVNGALGAIWTAFYV 703
+ +W + +++ LG + + G + + SG I+ WG FY++ AL + V
Sbjct: 98 VSEWNLICDRAYLGATLQSCFFAGMLIGSLVSGLISDAWGRKKCFYLSYALMVVAGVSCV 157
Query: 704 FL 709
F+
Sbjct: 158 FV 159
>SB_35463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 314 WGYVVLQIPGGELAAKFGGKILVIIS 391
WGY++L + G L F G ++V +S
Sbjct: 97 WGYIILNVAAGYLYGFFYGLVVVFVS 122
>SB_39495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 379 QDFSSEFSCQFSTRYLQHHVAPKERGEDHALGLHAPIEGILVVL 248
+D SSE S Q T H++ +GE+ L P+ G L L
Sbjct: 43 RDLSSEMSHQSKTHANTHYLKKSPKGENQKTMLKIPVGGTLGAL 86
>SB_52111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 557 RLGTIIY--AGGQLGTALQLMASGFIAQYW---GWPAIFYVNGALGAIWTAFYVFL 709
R+ T Y G +G + +G + +Y GW ++FY G G W ++ L
Sbjct: 6 RISTDFYYVLGTSVGYLFTMPITGLLTKYGFDGGWGSVFYCFGVFGLFWYIAWLLL 61
>SB_45061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 379 QDFSSEFSCQFSTRYLQHHVAPKERGEDHALGLHAPIEGILVVL 248
+D SSE S Q T H++ +GE+ L P+ G L L
Sbjct: 43 RDLSSEMSHQSKTHANTHYLKKSPKGENQKTMLKIPVGGTLGAL 86
>SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 379 QDFSSEFSCQFSTRYLQHHVAPKERGEDHALGLHAPIEGILVVL 248
+D SSE S Q T H++ +GE+ L P+ G L L
Sbjct: 388 RDLSSEMSHQSKTHANTHYLKKSPKGENQKTMLKIPVGGTLGAL 431
>SB_16913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = +2
Query: 347 ELAAKFG-GKILVIISLGVNSVVSMLIPLAAYYGGWQAVCACRVLQGLSQGFTYPSIHNL 523
++ +FG ++LV +LG+ S+V++L A G + + LQG+ + S++ L
Sbjct: 62 QVVNRFGYRRVLVATTLGL-SLVTLLFMTTALLGWYYVLPFVLFLQGMVNSTRFSSMNTL 120
Query: 524 IGKWVPLEEKSRLGTIIYAGGQLGTALQLMASGFIAQYWG 643
K +P S +++ QL ++ + +G + +G
Sbjct: 121 TLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 160
>SB_2168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 599 ALQLMASGFIAQYWGWPAIFYVNGALGAIWTAFYV 703
A L + +YW WP F+ +G+ IW ++ V
Sbjct: 67 ATSLDTKTYSIEYWRWPHPFF-SGSTATIWISYLV 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,098,308
Number of Sequences: 59808
Number of extensions: 616397
Number of successful extensions: 1571
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1563
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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