Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k08
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           25   0.54 
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           25   0.54 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.0  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   8.8  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.8  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 163 SNCNVIPGNGVGIWN--ASQH*HGHRCYDRQGQRGFLQLEHANPKRDP 300
           SN + + GNG  I +  AS   HGHR    +  R   QL+  NP+  P
Sbjct: 24  SNSDRVRGNGNAIVSNSASNSVHGHREGLGRRHRYNFQLKPYNPEHKP 71


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 163 SNCNVIPGNGVGIWN--ASQH*HGHRCYDRQGQRGFLQLEHANPKRDP 300
           SN + + GNG  I +  AS   HGHR    +  R   QL+  NP+  P
Sbjct: 25  SNSDRVRGNGNAIVSNSASNSVHGHREGLGRRHRYNFQLKPYNPEHKP 72


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 262 FLQLEHANPKRDPLLVLL 315
           FLQ E ++ +RDPL ++L
Sbjct: 37  FLQQEDSSIRRDPLYIVL 54


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 188 LPGITLQFEDAEYPRL 141
           LPGI  Q    EYPR+
Sbjct: 691 LPGINNQTSTREYPRI 706


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 82  LNQLLKKIQCKLAVTITLGTACQ 14
           L +L     CK   TIT  T CQ
Sbjct: 165 LGELAILYNCKRTATITAATDCQ 187


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 396 PSEMMTRIFPPNLAASSPP 340
           PS +  R  PPN     PP
Sbjct: 146 PSTLFPRFIPPNAYRLRPP 164


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 177 NIAV*RCRIPKIASGF 130
           NIAV   RIPK   GF
Sbjct: 167 NIAVIEYRIPKSGKGF 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,913
Number of Sequences: 438
Number of extensions: 5441
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)