Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k07
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    29   0.50 
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    29   0.50 
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    27   2.7  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   3.5  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    26   4.7  
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    25   8.2  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   8.2  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 20/81 (24%), Positives = 33/81 (40%)
 Frame = -1

Query: 572  SLSTNGLIYRPNLNMSKLFSKTTXXXXXXXXXXPNNLVIGKVVIGTRNTSWLHGITYEVY 393
            S+      YR   N+   + K              NLV+  VV     T WL+ +TY  +
Sbjct: 919  SILLTDAFYRQLNNIEVSYDKDILAIQTILMFVDPNLVLNAVVQRFEFTDWLYNLTYNEH 978

Query: 392  P*NCTHDCNISVLCTMIVIRV 330
            P N   +   ++LC M+ + +
Sbjct: 979  P-NYDTERIPAMLCKMLELLI 998


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 486 PIQLPKQLGYRQGCNWNPQYE 424
           P  L KQLGY +G  +NP Y+
Sbjct: 445 PTNLMKQLGYHKGYKYNPDYK 465


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 523 SCSAKPLPVLVDPHPAAQTTWLSARL*LEPAIRAGCTVLRTKFIRKTV 380
           +C    L VL    P     WL A     P++ A   ++  +FIRK V
Sbjct: 182 TCKRNALIVLFTIDPEKAKAWLLANFEQIPSLNASSLLVIIEFIRKVV 229


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 564 YKWPDLSSKLEHVEAVQQNHFQ 499
           Y+WP   + L+HV ++ Q H +
Sbjct: 509 YQWPHFFAVLDHVFSIHQTHLE 530


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +3

Query: 453 ADNQVVWAAGWGSTRTGSGFAEQLR--HVQVWTI--NQAICRERYSRIDRPITA 602
           A ++++W A W     G  FA   R   V+ W I  N+ IC     +    +TA
Sbjct: 622 AHSRIIWDASWAPKEMGYFFATASRDKFVKFWKINDNKKICDVAALQFSDAVTA 675


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 427 RAGCTVLRTKFIRKTVRMIAISASFV 350
           R G  VLR   + KT++++AI+  F+
Sbjct: 13  RIGRIVLRNALVAKTIQVVAINDPFI 38


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 650 TLIAAADVKPAGAQHIGSDRSIYSRVSLSTNGLIYRPNLNMSKLFSK 510
           ++ AA DVK    QHI  ++ +Y+   +      Y+  +++S  F K
Sbjct: 208 SMYAAEDVKTLIHQHILVNQRVYAEDVIEPKTFHYKNGISISMKFDK 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,517
Number of Sequences: 5004
Number of extensions: 61950
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)