Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k07
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    62   4e-12
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.54 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 62.5 bits (145), Expect = 4e-12
 Identities = 54/177 (30%), Positives = 77/177 (43%), Gaps = 11/177 (6%)
 Frame = +3

Query: 87  SRIVGGTATTIDRYPTMAAALFSSNMAQWWQGCGCSILNNRAVLTAAHCII-----XXXX 251
           SRIVGGT T I+ +P MA    +         CG +I++ R VLTAAHCII         
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGMI---CGATIISKRYVLTAAHCIIDENTTKLAI 215

Query: 252 XXXXXXXXXXXXXXXXXXHEVNRHIIHPNYNHRTKD----ADIAIMRTVLRINFVRNTVQ 419
                             H +N+ IIHP Y+   KD     DIA+++T   I F  + V 
Sbjct: 216 VVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKF-GDKVG 274

Query: 420 PARIAGSNY--NLADNQVVWAAGWGSTRTGSGFAEQLRHVQVWTINQAICRERYSRI 584
           PA +   ++  + A + V    GWG T      +  L+   +  + Q  C + Y  I
Sbjct: 275 PACLPFQHFLDSFAGSDVT-VLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYGNI 330


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +1

Query: 556 PFVESDTRE*IDRSLPICCA--PAGLTSAAAISVEVIPVVLYTTTVSSSGCARGD 714
           PF   D R+ +   +  C A  PAG   +  ++V  +    Y T V+     RG+
Sbjct: 64  PFRAEDYRQEVHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDTDVNKEYAIRGN 118


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 549 NQAICRERYSRIDRPITANM 608
           N AI  +RYS I RP+   +
Sbjct: 138 NAAIAYDRYSTIARPLDGKL 157


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 410 ITYEVYP*NCTHDCNISVLCTMIVIRVDDVPV 315
           I Y  YP N   +   S +C M+   + + P+
Sbjct: 174 INYVEYPQNSKRNSEESAICAMLKENMPEFPL 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,974
Number of Sequences: 438
Number of extensions: 4495
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)