Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k07
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family...    30   1.3  
At2g36250.2 68415.m04450 chloroplast division protein FtsZ (FtsZ...    30   1.8  
At2g36250.1 68415.m04449 chloroplast division protein FtsZ (FtsZ...    30   1.8  
At4g12970.1 68417.m02026 expressed protein                             29   4.1  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   5.4  
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica...    27   9.4  

>At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family
           protein
          Length = 161

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 328 MMCLLTSWTTPPLFPKEDPTRTLQTPTRSPIIQCAAVRTALLLRMEQPHP--CHH 170
           + C+   ++ P   P + P +T+QTPT +     +  +   L+R +Q  P  C H
Sbjct: 23  LCCITDCFSEPATRPHKSPPQTIQTPTPARSHSQSGSQQPPLIRRKQQQPLACQH 77


>At2g36250.2 68415.m04450 chloroplast division protein FtsZ
           (FtsZ2-1) identical to chloroplast division protein
           AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
           division protein FtsZ [Arabidopsis thaliana] GI:14195704
          Length = 478

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 432 AGSNYNLADNQVVWAAGWGSTRTGSGFAEQLRHVQVWTINQAICRERYSRI 584
           A SNYN A  +V+   G GS         ++  V+ W +N  I   R S +
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPV 162


>At2g36250.1 68415.m04449 chloroplast division protein FtsZ
           (FtsZ2-1) identical to chloroplast division protein
           AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
           division protein FtsZ [Arabidopsis thaliana] GI:14195704
          Length = 478

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 432 AGSNYNLADNQVVWAAGWGSTRTGSGFAEQLRHVQVWTINQAICRERYSRI 584
           A SNYN A  +V+   G GS         ++  V+ W +N  I   R S +
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPV 162


>At4g12970.1 68417.m02026 expressed protein 
          Length = 102

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/61 (22%), Positives = 22/61 (36%)
 Frame = -1

Query: 317 VDLMDNTSTISKRRSYANSPNTDTISYNTMCGCKDGSVIENGTATSLPPLGHIARKKCCC 138
           V L+     ++ RR +       T +YN   GC+     E        P+      +C C
Sbjct: 41  VSLLPQVHLLNSRRRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVC 100

Query: 137 H 135
           H
Sbjct: 101 H 101


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 456  RQGCNWNPQYELAARYYVRSLSVKLYA*LQYQRPLYD 346
            + G N  PQY L + Y     ++K  A   +Q+ LYD
Sbjct: 962  QDGANQKPQYSLRSLYRALEYAIKAEAIGGFQKALYD 998


>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|P46100
           Transcriptional regulator ATRX {Homo sapiens}; contains
           PFam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain;
           non-consensus GC donor splice site at exon boundary
           28614
          Length = 1457

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = -1

Query: 332 VDDVPVDLMDNTSTISKRRSYANSPNTDTISYNTMCGCKDGSVIENGTATSLPPLGHI 159
           +DD  V L  N +T +  +    SP T T  +N+    ++     N     + P  HI
Sbjct: 377 MDDDSVYLDGNNTTPNFAKDQVKSPETSTQVHNSEVNIEENGNFSNSDVDKMTPSTHI 434


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,141,460
Number of Sequences: 28952
Number of extensions: 336280
Number of successful extensions: 904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)