Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k06
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 281 6e-77
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 68 1e-12
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 48 1e-06
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 28 1.6
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 6.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 8.6
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 8.6
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 8.6
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 8.6
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 281 bits (690), Expect = 6e-77
Identities = 133/179 (74%), Positives = 157/179 (87%)
Frame = +3
Query: 207 EISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNL 386
E+ +ILEERI GA +A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNL
Sbjct: 35 EVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNL 94
Query: 387 EPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSR 566
E D VG V+FGND+L++EG++VKRT IVDVPVGE +LGRVVDALGNPIDGKGPI T R
Sbjct: 95 EADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTER 154
Query: 567 MRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGXTALAIDTIIN 743
RV +KAPGI+PR SV EPMQTG+KA+DS+VPIGRGQRELIIGDRQTG TA+A+DTI+N
Sbjct: 155 RRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIALDTILN 213
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 68.1 bits (159), Expect = 1e-12
Identities = 37/113 (32%), Positives = 59/113 (52%)
Frame = +3
Query: 405 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 584
+ + G + L++ G V TG+ + +PVG LGR+++ +G P+D +GPI +
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHAD 166
Query: 585 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGXTALAIDTIIN 743
AP + + E ++TGIK VD L P RG + + G G T I +IN
Sbjct: 167 APSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVF-IQELIN 218
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 48.0 bits (109), Expect = 1e-06
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Frame = +3
Query: 459 TGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP--RVSVREPMQT 632
TG + +PV E +LGRV + G PID KGP + + + I I P R+ E +QT
Sbjct: 92 TGHSMRIPVSEDMLGRVFNGSGLPID-KGP-NLLAEDYLDINGSPINPYARIYPEEMIQT 149
Query: 633 GIKAVDSLVPIGRGQR 680
GI ++D L I RGQ+
Sbjct: 150 GISSIDGLNSIARGQK 165
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 710 TSLTVTNDQLTLTTANWYQRVNSLDTSLHRLTHRHPGNDT 591
TS ++ L + N QR++SLD+S HPGN T
Sbjct: 154 TSDAYSSSILENSPPNKVQRLSSLDSSQDSFQEEHPGNVT 193
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 345 PSPQPGCSSSHKHERYHHQCSRH-DQSLLDQPWAR 244
P P G HK ++ CS H D S+ ++P A+
Sbjct: 405 PVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAK 439
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 491 LSDGNVYDSTSTLDNISFLDKLVIT 417
L GN+Y+STS + +S LD IT
Sbjct: 49 LEVGNIYNSTSASEILSTLDAKYIT 73
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 632 SLHRLTHRHPGNDTWRLNTDPHTGFR 555
SLH T H +D R N+DP + R
Sbjct: 428 SLHDSTTSHNKSDLMRTNSDPQSAMR 453
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 508 TRPRICSPTGTSTIAP 461
TRPR+ +P+ +ST+ P
Sbjct: 55 TRPRVSAPSSSSTVVP 70
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 166 HLANYMSQPPTKLPRSPPSSKRGSLEP 246
H +Y+S P SPP+SK S EP
Sbjct: 113 HQNDYISSPHADFSFSPPASKIQSHEP 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,999
Number of Sequences: 5004
Number of extensions: 64584
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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