Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k06
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)             223   2e-58
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)                79   4e-15
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_14021| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_35903| Best HMM Match : Carn_acyltransf (HMM E-Value=1.9e-13)       29   4.0  
SB_41865| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          29   5.3  
SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)                 29   5.3  
SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_25334| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_22668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               28   9.2  
SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)                28   9.2  

>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score =  223 bits (544), Expect = 2e-58
 Identities = 109/124 (87%), Positives = 116/124 (93%)
 Frame = +3

Query: 372 MALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPI 551
           MALNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE++LGRVVDALGNPIDGKGP 
Sbjct: 1   MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPT 60

Query: 552 DTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGXTALAID 731
              +R RVG+KAPGIIPR SV+EPM TGIKAVDSLVPIGRGQRELIIGDRQTG TA+AID
Sbjct: 61  G-GTRARVGVKAPGIIPRTSVKEPMLTGIKAVDSLVPIGRGQRELIIGDRQTGKTAIAID 119

Query: 732 TIIN 743
           TIIN
Sbjct: 120 TIIN 123


>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 38/113 (33%), Positives = 64/113 (56%)
 Frame = +3

Query: 405 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 584
           + + G + LI+ G     TG  + +PVG + LGR+++ +G PID +GP++T  R  +  +
Sbjct: 124 IAMDGTEGLIR-GQKCVDTGGPITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAE 182

Query: 585 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGXTALAIDTIIN 743
           AP  +   + +E ++TGIK VD L P  +G +  + G    G T L ++ I N
Sbjct: 183 APEFVEMSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 235


>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1659

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 497  DLLSDGNVYDSTSTLDNISFLDKLVITKYYHTHIVRF 387
            D LSDG+    ++T  N  F+D+++   + HT+I RF
Sbjct: 1175 DALSDGS---KSNTSGNYGFMDQIMALSWIHTNIARF 1208


>SB_14021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 309 HERY-HHQCSRHDQSLLD 259
           HERY HHQ +RHD   LD
Sbjct: 157 HERYQHHQTTRHDDQTLD 174


>SB_35903| Best HMM Match : Carn_acyltransf (HMM E-Value=1.9e-13)
          Length = 507

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
 Frame = -2

Query: 659 YQRVNSLDTSLHRLTHRHPGNDTWRLNT--DPHTGFRVDWSLAINRVTQSIYYTPKDLLS 486
           + R +S+  ++    + +  +DT  LN   D H    +D +  +N +  + Y    D   
Sbjct: 355 FSRFSSIFNAIDDTHYLNAIDDTHYLNATDDTHYLNAIDDTHYLNAIDDTHYLNAIDDTH 414

Query: 485 DGNVYDST---STLDNISFLDKLVITKYYH----THIVRFQVKGHSLEA*GELHHLLSLD 327
             N  D T   + +D+  +L+ +  T Y +    TH +      H L A  + H+L ++D
Sbjct: 415 YLNAIDDTHYLNAIDDTHYLNAIDDTHYLNAIDDTHYLNAIDDTHYLNAIDDTHYLNAID 474

Query: 326 VLQAINTSD 300
               +N +D
Sbjct: 475 DTHYLNATD 483


>SB_41865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 101 YRASNTSGDQRHFSQTYNCGRRKASYSARDSLR 3
           +   N+S +Q HFS  +     KASY++ ++ R
Sbjct: 36  FNTCNSSSNQEHFSLGFTTSPEKASYTSNETKR 68


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 428  LVITKYYHTHIVRFQVKGHSLEA*GELHHLLSLDVLQAINTSDTITNAQDTTSLF 264
            L +T  Y T +V F  K H+     +L  L+  D L +    + ITN   T  +F
Sbjct: 2403 LSVTNQYGTELVPFHEKDHTHPLGHQLSLLMKEDYLMSYVGGEQITNISYTGKIF 2457


>SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)
          Length = 263

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 494 DPWACSRCFG*PY*WQGTNRHEIPYEGRY 580
           D  ACSR  G    W G++ +EIPY G +
Sbjct: 83  DTSACSRIAGNTGYWDGSDTNEIPYFGAW 111


>SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 489 EQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPG 593
           E ILGR+   + NP+ G+G   T S ++  I A G
Sbjct: 211 ETILGRLPSFMENPLAGEGEFSTHSMLKDDIYAIG 245


>SB_25334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 348 PPSPQPGCSSSHKHERYHHQCSRHDQSLLDQPWARLQGSSL-RGWWRSRQ 202
           PP PQP    +H+    H+   +HD  L+++P+A      + + +W  R+
Sbjct: 66  PPKPQP----THQWRDLHNNHLQHDARLINRPYASEAKKGIDQAYWDRRK 111


>SB_22668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 692 NDQLTLTTANWY-QRVNSLDTSLHRLTHRHPGNDTWRLNTDPHTGF 558
           N  L L+  N Y QR      S  +L  R P NDTW+  TD   G+
Sbjct: 204 NQSLDLSPLNKYCQRETYATESPFQLARRIP-NDTWKTVTDAWNGY 248


>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 342 SPQPGCSSSHKHERYHHQCSRH 277
           SP P  SS H H R H+ C  H
Sbjct: 61  SPLPLSSSHHHHHRRHYLCHHH 82


>SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +3

Query: 348 EFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRV 509
           ++   +K +   ++P   G+VV G D  + E D+ K    I+ V        RV
Sbjct: 36  DYEGQIKKLMQYIDPSLDGIVVAGGDGTLLEADVSKIPIGIIPVGTNNTFFNRV 89


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 333 PGCSSSHKHERYHHQCSRHDQSL 265
           PG    H+H R+HH   +H++ +
Sbjct: 922 PGKKHKHRHRRHHHHRRQHNRKI 944


>SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)
          Length = 515

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 593 TWRLNTDPHTGFRVDWSLAINRVTQSIYYTPK 498
           TWR +  P   FR +W+L +   T   +  PK
Sbjct: 377 TWRQHRKPKLPFRANWALKVTSYTWRQHRKPK 408


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,254,378
Number of Sequences: 59808
Number of extensions: 559956
Number of successful extensions: 1913
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1900
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)