Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k06
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 304 5e-83
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 304 5e-83
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 132 2e-31
AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical ... 126 2e-29
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 73 2e-13
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 55 5e-08
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 46 3e-05
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 34 0.093
Z92972-5|CAB07484.1| 212|Caenorhabditis elegans Hypothetical pr... 32 0.49
AL021566-5|CAA16500.1| 212|Caenorhabditis elegans Hypothetical ... 32 0.49
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p... 31 1.1
U64858-4|AAB18282.2| 151|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical pr... 30 2.0
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical ... 30 2.0
AC006637-1|AAK85476.2| 342|Caenorhabditis elegans Hypothetical ... 29 2.6
Z75527-3|CAA99777.1| 428|Caenorhabditis elegans Hypothetical pr... 28 6.1
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 28 8.0
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 28 8.0
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 28 8.0
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 28 8.0
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 28 8.0
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 28 8.0
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 304 bits (746), Expect = 5e-83
Identities = 148/180 (82%), Positives = 163/180 (90%)
Frame = +3
Query: 204 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALN 383
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+N
Sbjct: 7 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMN 66
Query: 384 LEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKS 563
L+ DNVGVVVFGNDK+I+EGDIVKRTGAIVDVPVG+ +LGRVVDALGNPIDGKGPI
Sbjct: 67 LDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANAR 126
Query: 564 RMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGXTALAIDTIIN 743
R RV +KAPGIIPR+SVREPM TG+KAVDSLVPIGRGQRELIIGDRQTG TA+AIDTIIN
Sbjct: 127 RSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIIN 186
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 304 bits (746), Expect = 5e-83
Identities = 148/180 (82%), Positives = 163/180 (90%)
Frame = +3
Query: 204 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALN 383
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+N
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMN 93
Query: 384 LEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKS 563
L+ DNVGVVVFGNDK+I+EGDIVKRTGAIVDVPVG+ +LGRVVDALGNPIDGKGPI
Sbjct: 94 LDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANAR 153
Query: 564 RMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGXTALAIDTIIN 743
R RV +KAPGIIPR+SVREPM TG+KAVDSLVPIGRGQRELIIGDRQTG TA+AIDTIIN
Sbjct: 154 RSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIIN 213
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 132 bits (320), Expect = 2e-31
Identities = 84/181 (46%), Positives = 111/181 (61%), Gaps = 6/181 (3%)
Frame = +3
Query: 219 ILEERILGAAPKADLEETGRVLSIGDGIARVYG--LKNIQAEEMVEFSSGLK----GMAL 380
+L +RI+ A A + + + G+A G + I E ++ +G+ G L
Sbjct: 1 MLSKRIVTALNTAVKVQNAGIATTARGMAGASGSEVSKILEERILGTETGINLEETGKVL 60
Query: 381 NLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTK 560
++ D + V +G K I+ ++V+ I + + + V LGNPIDGKGPI
Sbjct: 61 SIG-DGIARV-YGL-KNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVLGNPIDGKGPIANA 117
Query: 561 SRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGXTALAIDTII 740
R RV +KAPGIIPR+SVREPM TG+KAVDSLVPIGRGQRELIIGDRQTG TA+AIDTII
Sbjct: 118 RRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTII 177
Query: 741 N 743
N
Sbjct: 178 N 178
Score = 118 bits (284), Expect = 4e-27
Identities = 57/73 (78%), Positives = 64/73 (87%)
Frame = +3
Query: 204 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALN 383
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+N
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMN 93
Query: 384 LEPDNVGVVVFGN 422
L+ DNVGVVV GN
Sbjct: 94 LDVDNVGVVVLGN 106
>AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical
protein H28O16.1b protein.
Length = 146
Score = 126 bits (303), Expect = 2e-29
Identities = 60/76 (78%), Positives = 68/76 (89%)
Frame = +3
Query: 204 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALN 383
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+N
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMN 93
Query: 384 LEPDNVGVVVFGNDKL 431
L+ DNVGVVVFGNDK+
Sbjct: 94 LDVDNVGVVVFGNDKI 109
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 584 GARYHSPGVCA*AYADWYQGC*LSGTNWPWS 676
G R H VCA W QG S NW W+
Sbjct: 115 GPRNHPTFVCARTNGYWSQGRRFSCANWTWT 145
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 73.3 bits (172), Expect = 2e-13
Identities = 38/113 (33%), Positives = 63/113 (55%)
Frame = +3
Query: 405 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 584
+ + G + L++ G V TG + +PVG + LGR+++ +G PID +GPI +K+ + +
Sbjct: 120 IAMDGTEGLVR-GQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAE 178
Query: 585 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGXTALAIDTIIN 743
AP + +E + TGIK VD L P +G + + G G T L ++ I N
Sbjct: 179 APEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 231
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 55.2 bits (127), Expect = 5e-08
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = +3
Query: 369 GMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKG 545
G L + + V VF G + + I + TG I+ PV E +LGR+ + G PID
Sbjct: 66 GQVLEISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGP 125
Query: 546 PIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQR 680
P+ + + + + R+ E +QTGI A+D + I RGQ+
Sbjct: 126 PVLAEDFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQK 170
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +3
Query: 459 TGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGI 638
TG I PV +LGR+ + G PID P+ + + + + R+ E +QTGI
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGI 168
Query: 639 KAVDSLVPIGRGQR 680
A+D + I RGQ+
Sbjct: 169 SAIDVMNSIARGQK 182
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 34.3 bits (75), Expect = 0.093
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 363 LKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPI 533
L G + LE D + V+ + GD V RTG + V +G I+G + D + P+
Sbjct: 39 LVGEIIRLEGDYATIQVYEETSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPL 95
>Z92972-5|CAB07484.1| 212|Caenorhabditis elegans Hypothetical
protein T19C9.5 protein.
Length = 212
Score = 31.9 bits (69), Expect = 0.49
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 584 LNTDPHTGFRVDWSLAINRVTQSIYYTPKDLLSDGNVYDSTSTLDN--ISFLDKLVITKY 411
+N D H + + A NR+ Q +Y K + G +Y+S +D+ I++ +L+I KY
Sbjct: 117 INKDTHDALKSEAKAAKNRLRQMLYSKSKSI---GCIYESCDKIDSKGINYNTRLLICKY 173
>AL021566-5|CAA16500.1| 212|Caenorhabditis elegans Hypothetical
protein F08E10.7 protein.
Length = 212
Score = 31.9 bits (69), Expect = 0.49
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -2
Query: 584 LNTDPHTGFRVDWSLAINRVTQSIYYTPKDLLSDGNVYDSTSTLDN--ISFLDKLVITKY 411
+N D H + + NR+ Q +Y K + G +Y+S +D+ I++ +LVI KY
Sbjct: 117 INKDTHNALKSEEKATKNRLRQMLYSKSKSI---GCIYESCDKIDSKGINYNTRLVICKY 173
>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 309 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDK-LIKEGDIVKRTGAIVDVPV 485
+ GL +Q+ + E G+K + +L + +DK LIK G I+ + I VP+
Sbjct: 631 IAGLPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPI 690
Query: 486 GEQILGR-VVDAL 521
++G+ VV AL
Sbjct: 691 DTSLIGKSVVPAL 703
>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 309 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDK-LIKEGDIVKRTGAIVDVPV 485
+ GL +Q+ + E G+K + +L + +DK LIK G I+ + I VP+
Sbjct: 631 IAGLPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPI 690
Query: 486 GEQILGR-VVDAL 521
++G+ VV AL
Sbjct: 691 DTSLIGKSVVPAL 703
>U64858-4|AAB18282.2| 151|Caenorhabditis elegans Hypothetical
protein C16D9.3 protein.
Length = 151
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 348 PPSPQPGCSSSHKHERYHHQCSRHDQSLLD 259
PP Q C ER H C R+DQS+++
Sbjct: 96 PPGSQLKCHFDKSRERLHANCYRYDQSVVN 125
>Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical
protein T15D6.9 protein.
Length = 407
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 348 PPSPQPGCSSSHKHERYHHQCSRHDQSLLD 259
PP Q C H +Y+ C R+DQS+++
Sbjct: 285 PPGSQSICIFLHDWNKYYADCFRYDQSIIN 314
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -2
Query: 587 RLNTDPHTGFRVDWSLAINRVTQSIYYTPKDLLSDGNVYDS---TSTLDN-ISFLDKLVI 420
R ++ P+ DW++ I + ++ +Y+T LL+ D T T +N F+ K V
Sbjct: 82 RTDSIPNANRHADWAIQIKKPSKYLYHTSFALLAAFAHRDQIIVTLTSENQFKFVFKTVY 141
Query: 419 TKYYHTH 399
+YY H
Sbjct: 142 CRYYDCH 148
>AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical
protein T24C4.2 protein.
Length = 423
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -3
Query: 382 LRAIPLRPEENSTISSAWMFFKP*TRAIPSPMLKTRPVSSRSALGAAPRILS 227
+R IPLRP +NS F++ + SP++ S LGAA R+L+
Sbjct: 352 VRPIPLRPSQNSA------FYQMLNSSSTSPIIAVTKAEVDSVLGAASRLLN 397
>AC006637-1|AAK85476.2| 342|Caenorhabditis elegans Hypothetical
protein F41B4.1 protein.
Length = 342
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 357 RRTPPSPQPGCSSSHKHERYHHQCSRHDQSLLDQ 256
R PP P P + SHK+E SR S L++
Sbjct: 54 RELPPPPPPRKTPSHKYEEMRRSLSRGPSSTLER 87
>Z75527-3|CAA99777.1| 428|Caenorhabditis elegans Hypothetical
protein C15C8.3 protein.
Length = 428
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 392 RFQVKGHSLEA*GELHHLLSLDVLQAINTSDTITNAQDTTSLF*ISLGRGSKD-PLFEDG 216
R KG E E + LLS LQ ++S + + +D + ISLG +++ LF D
Sbjct: 32 RMNAKGKLAEYEKERNELLSKKSLQLASSSSPVIDYEDMAYMVQISLGSPAQNFVLFIDS 91
Query: 215 GDLGSFV 195
G +V
Sbjct: 92 GSSNLWV 98
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 277 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 101
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 453 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 512
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 277 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 101
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 277 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 101
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 277 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 101
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 277 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 101
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 453 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 512
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 277 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 101
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,342,506
Number of Sequences: 27780
Number of extensions: 391393
Number of successful extensions: 1315
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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