Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k06
(744 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 252 2e-67
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 75 4e-14
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 75 4e-14
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 75 4e-14
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 52 3e-07
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 52 3e-07
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 52 3e-07
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 52 3e-07
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 52 3e-07
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 31 0.81
At5g22710.1 68418.m02653 expressed protein 31 1.1
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 29 2.5
At1g16270.1 68414.m01948 protein kinase family protein contains ... 29 2.5
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 29 4.3
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 28 7.5
At3g26640.1 68416.m03329 transducin family protein / WD-40 repea... 28 7.5
At2g41290.1 68415.m05099 strictosidine synthase family protein s... 28 7.5
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 28 7.5
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 28 7.5
At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal hydrolase-r... 28 7.5
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 252 bits (616), Expect = 2e-67
Identities = 120/182 (65%), Positives = 147/182 (80%)
Frame = +3
Query: 198 KAAEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMA 377
+AAE++ + E RI ++E GRV+S+GDGIA+VYGL IQA EMV F++G+KGMA
Sbjct: 276 RAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMA 335
Query: 378 LNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDT 557
LNLE +NVG+VVFG D IKEGD+VKRTG+IVDVP G+ +LGRVVDA+G PIDGKG +
Sbjct: 336 LNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGALSD 395
Query: 558 KSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGXTALAIDTI 737
+ RV +KAPGI+ R SV EPMQTG+KAVDSLVPIGRGQREL+IGDRQTG T +AIDTI
Sbjct: 396 HEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGDRQTGKTTIAIDTI 455
Query: 738 IN 743
+N
Sbjct: 456 LN 457
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 75.4 bits (177), Expect = 4e-14
Identities = 41/113 (36%), Positives = 63/113 (55%)
Frame = +3
Query: 405 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 584
+ + G + L++ G V TGA + VPVG LGR+++ LG PID +G I T+ + +
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRD 194
Query: 585 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGXTALAIDTIIN 743
AP ++ + +E + TGIK VD L P RG + + G G T L ++ I N
Sbjct: 195 APALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 247
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 75.4 bits (177), Expect = 4e-14
Identities = 41/113 (36%), Positives = 63/113 (55%)
Frame = +3
Query: 405 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 584
+ + G + L++ G V TGA + VPVG LGR+++ LG PID +G I T+ + +
Sbjct: 139 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRD 197
Query: 585 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGXTALAIDTIIN 743
AP ++ + +E + TGIK VD L P RG + + G G T L ++ I N
Sbjct: 198 APALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 250
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 75.4 bits (177), Expect = 4e-14
Identities = 41/113 (36%), Positives = 63/113 (55%)
Frame = +3
Query: 405 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 584
+ + G + L++ G V TGA + VPVG LGR+++ LG PID +G I T+ + +
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRD 194
Query: 585 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGXTALAIDTIIN 743
AP ++ + +E + TGIK VD L P RG + + G G T L ++ I N
Sbjct: 195 APALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 247
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +3
Query: 366 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 542
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 56 RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 115
Query: 543 GPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQR 680
PI ++ + + + R E +QTGI +D + I RGQ+
Sbjct: 116 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 161
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +3
Query: 366 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 542
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 56 RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 115
Query: 543 GPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQR 680
PI ++ + + + R E +QTGI +D + I RGQ+
Sbjct: 116 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 161
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +3
Query: 366 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 542
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 55 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 114
Query: 543 GPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQR 680
PI ++ + + + R E +QTGI +D + I RGQ+
Sbjct: 115 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 160
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +3
Query: 366 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 542
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 55 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 114
Query: 543 GPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQR 680
PI ++ + + + R E +QTGI +D + I RGQ+
Sbjct: 115 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 160
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +3
Query: 366 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 542
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 55 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 114
Query: 543 GPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQR 680
PI ++ + + + R E +QTGI +D + I RGQ+
Sbjct: 115 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 160
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 106 GACLMLLPRCQRWRCPQWPWHLANYMSQPPTKLPRSPP-SSKRGSLEPRPR 255
G+ ++ +PR +R W A ++ PP +P PP R + P PR
Sbjct: 495 GSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPR 545
>At5g22710.1 68418.m02653 expressed protein
Length = 262
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -2
Query: 620 LTHRHPGNDTWRL-NTDPHTGFRVDWSLAINRVTQSIYYTPKDLLSDGNVYDSTSTLDNI 444
+ HR P TW + N DWS + YTP D+ D +++D+ S N+
Sbjct: 22 INHRDPSYMTWWIHNAVMRLDLVCDWSYLVAMKMDPSVYTPVDIDVDFDIFDNHSA-GNV 80
Query: 443 S 441
S
Sbjct: 81 S 81
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 408 VVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVV 512
V +G D +I DI+ TG++ VP G ++ G+ V
Sbjct: 207 VKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTV 241
>At1g16270.1 68414.m01948 protein kinase family protein contains
PF|00069 Eukaryotic protein kinase domain. ESTs
gb|H37741, gb|T43005 and gb|AI100340 come from this gene
Length = 1147
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 437 LDKLVITKYYHTHIVRFQVKGHSLEA 360
L + V+ YY TH+V++Q+ G L+A
Sbjct: 205 LRQKVLEIYYRTHVVKYQLPGEDLDA 230
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -1
Query: 345 PSPQPGCSSSHKHERYHHQCSRH 277
PSP P S H H +HH H
Sbjct: 321 PSPSPSPHSKHHHHHHHHHHHHH 343
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 106 GACLMLLPRCQRWRCPQWPWHLANYMSQPPTKLPRSPP-SSKRGSLEPRPR 255
G+ ++ PR +++ W ++ PP LP PP R P PR
Sbjct: 548 GSAIIWTPRSRKFHGKSGRWMKGYHLKVPPPPLPPQPPRGGPRQRFLPTPR 598
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 169 LANYMSQPPTKLPRSPPSSKRGSLEPRPRLI*KR 270
L +YM P T+L RGSLE +P+ I K+
Sbjct: 1168 LDSYMEGPSTRLRVRHQKPSRGSLETKPKKIGKK 1201
>At3g26640.1 68416.m03329 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to ATAN11 (GI:2290528) [Arabidopsis thaliana]
(Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies)
Length = 346
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Frame = -3
Query: 274 PVSSRSALGAAPRILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALG--KRLA 101
P++S A PR + + ++ + +W +E + +D +G ++
Sbjct: 137 PITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGVGVFASVS 196
Query: 100 TEPAIRA-EISDIFHKLIIVADGKPVTPL 17
+ ++R ++ D H II G+P TPL
Sbjct: 197 EDGSVRVFDLRDKEHSTIIYESGEPSTPL 225
>At2g41290.1 68415.m05099 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]; contains strictosidine synthase
domain PF03088
Length = 376
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 342 SPQPGCSSSHKHERYHHQCSR 280
S + GC H+H+R H C R
Sbjct: 91 SAREGCEGPHEHQRTEHVCGR 111
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 500 KDLLSDGNVYDSTSTLDNISFLDKLVITKYYHTHIVR 390
KDL S + L+ I F D+L++ + H H+++
Sbjct: 363 KDLYSCSKGNTKSQHLETIEFEDRLLVNSFSHIHVMK 399
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -1
Query: 408 PHPHCQVPS*GPFP*GLRRTPPSPQPGCSS---SHKHERYHH 292
P P P P P L PP+P P + HKH+R+HH
Sbjct: 148 PAPVSPPPVQAPSPISL---PPAPAPAPTKHKRKHKHKRHHH 186
>At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1094
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/86 (25%), Positives = 34/86 (39%)
Frame = -3
Query: 271 VSSRSALGAAPRILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLATEP 92
V R L A ++L S + W+ TCS + A K + +
Sbjct: 179 VYGREGLDALEQVLDSARINRKWKFWMCRTCSQTFFYPKKFKNHLEQVHDAKYKPVRED- 237
Query: 91 AIRAEISDIFHKLIIVADGKPVTPLA 14
+ I D++ +I VAD +PV LA
Sbjct: 238 -LAQSIDDVWAGMISVADWEPVDALA 262
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,789,869
Number of Sequences: 28952
Number of extensions: 379103
Number of successful extensions: 1266
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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