Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k05
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41437| Best HMM Match : Cu2_monooxygen (HMM E-Value=1.5e-29)        30   2.3  
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                  30   2.3  
SB_11001| Best HMM Match : Filaggrin (HMM E-Value=4.4)                 28   9.2  

>SB_41437| Best HMM Match : Cu2_monooxygen (HMM E-Value=1.5e-29)
          Length = 225

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 612 HLLLSFGFSCPFSLGSFCHLFQASFFPWPLI 520
           H +L FG S P S   F ++FQ   + WP I
Sbjct: 98  HHMLLFGCSTPASKEGFWYVFQRLLYSWPSI 128


>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +2

Query: 473 IQAGKNMGEGRQEVKKIRGQGKKEA*KR*QKEPSEKGQEKPKERSK 610
           IQ  K   + R+E +K + Q KKE  ++ +KE  EK ++K  ER +
Sbjct: 338 IQQEKEKQKERREKEKQKHQEKKEKERQREKEKLEKEKQKELERKE 383


>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 344

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 485 KNMGEGRQEVKKIRGQGKKEA*KR*QKEPSEKGQEKPKERS 607
           K  G+  +++K  + Q  K+A +  Q  P  KGQ  PK +S
Sbjct: 253 KTKGQAGRKIKISKPQNHKQAPRPRQASPKTKGQASPKTKS 293


>SB_11001| Best HMM Match : Filaggrin (HMM E-Value=4.4)
          Length = 136

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 494 GEGRQEVKKIRGQGKKEA*KR*QKEPSEKGQEKPKE 601
           GEG+++VK  RG+GK++A  R   +   KG+ K ++
Sbjct: 83  GEGKEKVKTRRGEGKRKAKAR---QGEGKGKVKARQ 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,287,227
Number of Sequences: 59808
Number of extensions: 120797
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)