Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k04
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 30 0.25
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 28 1.0
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 28 1.4
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 3.1
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 26 4.1
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 4.1
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 26 5.5
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 26 5.5
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 26 5.5
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 25 7.2
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 7.2
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 25 7.2
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 9.5
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 9.5
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 25 9.5
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 9.5
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +2
Query: 104 NMSVEASDSGKSDRKLYNSVITADYDDATKRCEQLQSEPDGSYIIKNTVTELLNNAESNT 283
+++V A DS S D+D K + + EP G + N L NA+ +T
Sbjct: 279 SVNVYAKDSNHSSASGNTKNKAKDWDSLAKLADLEEDEPTGEAALANLFQNLYKNADDDT 338
Query: 284 INFSYKLWT 310
K +T
Sbjct: 339 RRAMMKSYT 347
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 416 MTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLK 568
M LS D D GD +A+G +H W+ +S++ S + + ++P ++LK
Sbjct: 258 MCLSGDFDHYGDVEAFG---NHPPWWRQLSNFASVQDRLRDWDPIVAKKLK 305
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 347 LEFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGD 451
LE+ L+L + K+IN HD ++ TL L D
Sbjct: 457 LEWVLLLQRRTGGKLINMHDPIFQTLLLQLSDPSD 491
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 392 INKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQ 559
I++ DD Y + L++ D DAY + ++ +F+S ESN F YN+
Sbjct: 54 IHEQDDSYSDI---LEEEPDEDAYDSPERPSSTEEFISQDESNISAGSSFMFPYNR 106
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 191 KRCEQLQSEPDGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCFPLEFRLILD 370
K E+L + + ++ N+V LN+ NF Y +W+ N QS L + L D
Sbjct: 803 KMNEELSTTDEAVKLLANSV---LNDVHPRVPNFRYFIWSVPMNNWFQSLVWL-YTLSFD 858
Query: 371 DK 376
+K
Sbjct: 859 EK 860
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 350 EFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 490
E + D++ D + + D+ + S D+ ++GD DEDD K+S
Sbjct: 345 EAEWVADEEDDGEDLESEDE-EVDNSDDIVEDGDNAFVDDEDDDKDS 390
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.8 bits (54), Expect = 5.5
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = +2
Query: 56 KLKILTTLSVIIATFFNMSVEA----SDSGKSDRKLYNSVITADYDDATKRCEQLQSEPD 223
++ ++TT S++ T +A SDS + + +++ YD+ + + D
Sbjct: 323 EVNMITTTSLVDNTMEKTDADAASLSSDSDGEEGHIVHALEEMAYDEENPYVDVVPKAMD 382
Query: 224 GSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCF 343
S V +N A+ +T+N +Y + +T N V F
Sbjct: 383 ESENPDFGVDTEVNMADGSTMNENYSIISTAAANGVYEYF 422
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 431 DLDQNGDRDAYGDEDDHKNSWKFMSSWESN 520
D+ + D DAYG+E+ W S +SN
Sbjct: 254 DISEILDLDAYGNENTSNLEWSIQRSNDSN 283
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 587 DDERKVFSSDDATDSTSQW 643
+DE V+SSD +T+S+SQ+
Sbjct: 328 EDEESVYSSDVSTESSSQF 346
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 548 KYNQRLKMGDPVKDDERKVFSSDDATDSTSQWYL 649
K + L G P++ D FSS+D D+T+ +YL
Sbjct: 146 KKSHHLFSGSPLRLDLNS-FSSEDNADATNSFYL 178
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 153 TIQ*LPLTTMMQPKDASNFNPNRMVR 230
T++ PL+ M + KD+S F NR+++
Sbjct: 209 TVEPTPLSFMSEMKDSSQFYANRVMK 234
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 176 YDDATKRCEQLQSEP--DGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQS 337
Y++ RC+ + P D S+++ T T+ +NN + N K +T G Q+++ S
Sbjct: 525 YENHKNRCDPINYVPMNDASHVM--TCTKAMNNFKRNATFMRTKSYTFG-QSVLAS 577
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 494 KFMSS-WESNRVYFKIFNPKYNQRLKMGDPVKDDERKVFSSDDATDSTSQWYLQ 652
KF+ + +E + FKI++ RL++ D RK+ S D+ + +++W+LQ
Sbjct: 425 KFIENDFEKMKRLFKIYD-----RLRIQLKGIDQSRKLDFSPDSEEKSTKWFLQ 473
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 182 DATKRCEQLQSEPDGSYIIKNTVTEL 259
+ATKRC+QL E D I++N V +L
Sbjct: 439 EATKRCDQLNREID---ILQNHVEKL 461
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 327 IFWCPVVHSL*EKLIVLDSALLSSSVTVFFMMYEPSGS 214
IFW + +K I +D+ +L+ T +EP G+
Sbjct: 324 IFWTEIYDQSEKKWIAVDAVVLNGVYTNDMTWFEPKGA 361
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 431 DLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLK 568
D DQ GD +A+G D + +S + S + + + P +++LK
Sbjct: 247 DFDQYGDTEAFGTHPDWERQ---LSKFASVQDRLREWRPSVSEKLK 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,387
Number of Sequences: 5004
Number of extensions: 53945
Number of successful extensions: 175
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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