Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k04
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626... 31 1.1
03_05_0625 - 26225201-26225879,26226706-26227553 29 2.4
01_07_0228 - 42154400-42154498,42155120-42155196,42156341-421564... 29 3.2
01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974... 29 3.2
08_02_1465 - 27319377-27319405,27319936-27320101,27320336-273204... 28 5.6
11_01_0650 - 5265106-5265305,5265972-5266049,5266391-5266544,526... 28 7.5
06_03_0588 + 22567820-22570802,22570917-22571269 28 7.5
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 27 9.9
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 27 9.9
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 27 9.9
>03_05_0105 -
20861130-20861384,20861472-20862262,20862364-20862618,
20862713-20862827,20862959-20863011,20863113-20863373,
20863699-20863749,20863863-20864114,20864504-20864726,
20865317-20865460
Length = 799
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = -3
Query: 577 ITHFQTLIVF-RVKDFEINSVRFPRGHKLPTVLMVVLVAICVSITI---LV*ILAQSHVQ 410
++H Q+L F RVK S RFP +P V ++ VA CV +T+ I+ ++H
Sbjct: 396 VSHLQSLSCFPRVKILH-TSKRFPGQLYIPGVNFLLCVAACV-VTVSFKTTVIIGKAHEI 453
Query: 409 IVMLVNNFTVLLI 371
V+LV T LL+
Sbjct: 454 CVILVMIITTLLM 466
>03_05_0625 - 26225201-26225879,26226706-26227553
Length = 508
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +2
Query: 305 WTTGHQNIVQSCFPLEFR----LILD-DKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGD 469
W H+N + S FP + R L+ D DKKD K D + D + D D G+
Sbjct: 341 WVPKHENNLDSVFPRQTRRRWMLLQDLDKKDSTTFRKEHDEEIDFEWSSDGDDDSDHRGN 400
Query: 470 EDDHK 484
+++
Sbjct: 401 VPEYR 405
>01_07_0228 -
42154400-42154498,42155120-42155196,42156341-42156425,
42156511-42156956,42157070-42157194,42157273-42157523
Length = 360
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +2
Query: 71 TTLSVIIATFFNMSVEASDSGKSDRKLYNSVITADYDDATKRCEQLQSEPDGSY 232
TT+ V+I NM +E+ + SD K N+V+ DY ++ + + ++ DGS+
Sbjct: 4 TTVDVMIRKGTNMRLESYEF-LSDFKHGNAVVLLDYTESGNKGSFIVTQVDGSF 56
>01_06_1760 -
39697079-39697162,39697280-39697340,39697415-39697479,
39697579-39697860,39697938-39698012,39698121-39698195,
39698343-39698399,39698653-39698726,39698912-39699055,
39699608-39699662,39700027-39700149,39700276-39700320,
39701068-39701160,39701249-39701662
Length = 548
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +2
Query: 215 EPDGSYIIKNTVTELLNN--AESNTINFSYKLWTTGHQNIVQSCFPLEFRLILDDKKDCK 388
+ + + +KN +T+ + A I +++L T +E I++D +
Sbjct: 471 DAESEHYVKNVITKFSTDPKARRTVIIIAHRLSTI---QAADRIIVMENGNIVEDGNHSE 527
Query: 389 IINKHDDLYMTLSK 430
+INKHD LY L++
Sbjct: 528 LINKHDGLYSRLAR 541
>08_02_1465 -
27319377-27319405,27319936-27320101,27320336-27320444,
27320865-27321448
Length = 295
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 398 KHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 490
KH DLY+ S+ RD+Y D+DDH S
Sbjct: 219 KHPDLYLGKSEK-----GRDSYDDDDDHHES 244
>11_01_0650 -
5265106-5265305,5265972-5266049,5266391-5266544,
5266635-5266701,5266723-5266796,5266910-5267794
Length = 485
Score = 27.9 bits (59), Expect = 7.5
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Frame = +2
Query: 155 NSVITADYDDATKRCEQLQSEPDGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQ 334
++ I+A + RCE + + D ++K T + + +N S L +
Sbjct: 360 SAAISAHLEIVEIRCEMIDNFVDE--VLKYLSTFNILYVDVAILNSSLLLALIAPMSFAM 417
Query: 335 -SCFPLEFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDD 478
+ F E I DD +D DD + D D++ D D+Y D+DD
Sbjct: 418 WTIFNFEEIGIFDDDEDEDEDRDGDDDEDSYEDDDDKDEDEDSYEDDDD 466
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 505 GHKLPTVLMVVLVAICVSITILV*ILAQSHVQIVMLVNN 389
GH LP + ++L+ S +I V +L SH+Q + L NN
Sbjct: 362 GHMLPNIQELILLNNKFSGSIPVSLLNASHLQKLSLANN 400
>10_08_0959 -
21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Frame = +2
Query: 356 RLILDDKKDCKIINKHDDLYMTLS------KDLDQNGDRDAYGDEDDHKNSWKF 499
RL++DD +D K +++ D+ + L K ++Q+ + Y ++ ++ W F
Sbjct: 478 RLVVDDNEDIKKLDRELDIEVILQWRMLAHKFVEQSAETHQYAQQNKQQSWWSF 531
>08_02_1091 + 24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/90 (24%), Positives = 40/90 (44%)
Frame = +2
Query: 209 QSEPDGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCFPLEFRLILDDKKDCK 388
Q +PD + I KNTV ++N S+ S+ + T N V++ ++ D
Sbjct: 1131 QKDPDDTEIRKNTVRVVINQLLSDEKTESFPILVTSGSNNVKA-------VVADGNSG-- 1181
Query: 389 IINKHDDLYMTLSKDLDQNGDRDAYGDEDD 478
+ ++ LS D D++ + Y D D+
Sbjct: 1182 --SSGHQIHGRLSDDADKSYEMSPYEDSDE 1209
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 407 DLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYF 532
D ++ LSKD D N + + D D++ N+ S+ +N +YF
Sbjct: 173 DSWLLLSKDSDNNNNNNNNNDNDNNDNN---NSNSSNNGMYF 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,053,999
Number of Sequences: 37544
Number of extensions: 318143
Number of successful extensions: 783
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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