Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k04
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43574| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_45858| Best HMM Match : Chromadorea_ALT (HMM E-Value=2.9)           33   0.27 
SB_50715| Best HMM Match : Mak16 (HMM E-Value=8.2)                     32   0.35 
SB_54769| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_2546| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.2  
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_37482| Best HMM Match : WD40 (HMM E-Value=1.1e-05)                  29   4.4  
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)               29   4.4  
SB_19822| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_3013| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2)                28   5.8  
SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)                    28   7.6  
SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_42885| Best HMM Match : DUF983 (HMM E-Value=9.7)                    28   7.6  
SB_12642| Best HMM Match : Pkinase (HMM E-Value=5.3e-07)               28   7.6  

>SB_43574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 14/78 (17%), Positives = 42/78 (53%)
 Frame = -3

Query: 604 HFTLIVLHRITHFQTLIVFRVKDFEINSVRFPRGHKLPTVLMVVLVAICVSITILV*ILA 425
           H T+I++   ++  T+I+  +  + I  +         T++++++ +    ITI++ ++ 
Sbjct: 23  HITIIIILIASYHITIIIILIASYHITIIIILIASHHITIIIILIASY--HITIIIILIT 80

Query: 424 QSHVQIVMLVNNFTVLLI 371
            +H+ I++  N   +++I
Sbjct: 81  SNHITIIVTKNKTLIIII 98


>SB_45858| Best HMM Match : Chromadorea_ALT (HMM E-Value=2.9)
          Length = 291

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = +2

Query: 89  IATFFNMSVEASDSGKSDRKLYNSVITADYDDATKRCEQLQSEPDGSYIIKNTVTELLNN 268
           +A   N  V+  D    D   Y+S    DYD      ++ + E D S  I+N + +  ++
Sbjct: 123 VAFVDNQEVDDDDRDSDDASDYDSDEDYDYDSDDDHGDEREDEDDNSEAIENNLND--DD 180

Query: 269 AESNTINFSYKLWTTGH 319
             +N + FS  ++T+ +
Sbjct: 181 VMTNGVLFSLPVYTSSY 197


>SB_50715| Best HMM Match : Mak16 (HMM E-Value=8.2)
          Length = 349

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 26/87 (29%), Positives = 40/87 (45%)
 Frame = +2

Query: 254 ELLNNAESNTINFSYKLWTTGHQNIVQSCFPLEFRLILDDKKDCKIINKHDDLYMTLSKD 433
           EL    +S + N  YK      + + QS  P   + +  D+K  K  N H++LYM L KD
Sbjct: 178 ELDQTIDSTSANSDYK-----PKQVAQS--PRHRKNVNIDRKVNKTKNIHENLYMLLKKD 230

Query: 434 LDQNGDRDAYGDEDDHKNSWKFMSSWE 514
              N   D +  + D   +W+  S W+
Sbjct: 231 TALNYHEDIF-PKSDSDQTWE-SSPWD 255


>SB_54769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 509 TRT*TSNCSYGRPRRHMRLYHHFGLDPCSESCTDRH 402
           TR  T  C Y R R H+R+  H  L P  ++ T++H
Sbjct: 80  TRVSTRVCVYTRVRTHVRVRFHTRLVPLLQTITNKH 115


>SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = -2

Query: 608 RTLYAHRPSQDHPFSNVDCISG*RF*NKLCSIPTRT*TSNCSYGRPRRHMRLYHHFGLDP 429
           RT   HR  Q H   +  CI    + ++   I  RT  S C++  P  H  +  H  ++ 
Sbjct: 66  RTNNTHRNKQMHTVIS-KCIRS--YADEQGHIQMRTVISRCTWSYPDAHGHIQMHMVINK 122

Query: 428 CSESCTDRH 402
           C+ S  D H
Sbjct: 123 CARSYPDAH 131


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 464 GDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLKMGDPVKD--DERKVFSSDDATDST 634
           GD+D  K   + ++ W    V+   F  K  + L +G PV+     +K    DD+ DS+
Sbjct: 96  GDKDTAKGLERLLNIWSERGVFELSFIEKIRKGLAIGSPVESPPPSKKSRIEDDSKDSS 154


>SB_2546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 26.6 bits (56), Expect(2) = 3.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 368 DDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 490
           DD  D  +++  DD+      D   +GD D   D+DDH ++
Sbjct: 142 DDYDDDVVVDNDDDV-----DDAVDDGDDDVVDDDDDHNDA 177



 Score = 21.0 bits (42), Expect(2) = 3.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 572 GDPVKDDERKVFSSDD 619
           GD V DD+  V + DD
Sbjct: 180 GDVVNDDDDNVVNDDD 195


>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 470 EDDHKNSWKFMSSWESNRVYFKIF-NPKYNQRLKMGDPVKDDERKV-FSSDDATD 628
           E +++  ++    W  + V    + N +YN+ +K  D   D+E ++ +  DD TD
Sbjct: 70  EIEYERKYETRVDWLYSTVGIPYYGNSRYNRPIKKNDLYSDEEEEIDYKDDDCTD 124


>SB_37482| Best HMM Match : WD40 (HMM E-Value=1.1e-05)
          Length = 433

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +2

Query: 182 DATKRCEQLQ----SEPDGSYIIKNTVTELLNNAESNTINFSYKLW-TTGHQNIVQSCFP 346
           D T RC  L      E D  + +     ++L+  E +T  FSY  + TT H  ++ SCF 
Sbjct: 216 DGTLRCADLTVPVFHEVDLKFTLLFNTKKVLSLVEDDTA-FSYMTFGTTSHSCLLASCFD 274

Query: 347 LEFRLILDDKKDCK 388
               +I+D + D K
Sbjct: 275 GSI-MIVDSRIDAK 287


>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
          Length = 1737

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 488 CSYGRPRRHMRLYHHFGLDPCSESCTDRHA 399
           C +GR +  ++ +  FGLD C  +CT R A
Sbjct: 139 CMFGRSK-DLKAFIEFGLDNCVTTCTGRTA 167


>SB_19822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = -3

Query: 487 VLMVVLVAICVSITILV*ILAQSHVQIVMLVNNFTVLLIV 368
           V+MVV+V + V + I++ ++    V +V++V    ++LIV
Sbjct: 35  VVMVVVVVVVVMVVIVMVVVVMMMVMVVVVVMVMVMVLIV 74


>SB_3013| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2)
          Length = 213

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/41 (26%), Positives = 26/41 (63%)
 Frame = -3

Query: 490 TVLMVVLVAICVSITILV*ILAQSHVQIVMLVNNFTVLLIV 368
           T+++++ + I ++ITI + I+    + +V +VN    ++IV
Sbjct: 144 TIIIIITITITITITITIIIIIILIIVVVTIVNIIIFIIIV 184


>SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +2

Query: 368 DDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDD 478
           DD KD    N +DD       D D NGD D   D+DD
Sbjct: 55  DDNKDDDSDNNYDDN----DDDNDDNGDDDDNDDDDD 87


>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3922

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/30 (33%), Positives = 22/30 (73%)
 Frame = +2

Query: 59  LKILTTLSVIIATFFNMSVEASDSGKSDRK 148
           +++  +L+ + A+ F +++EA+DSG  +RK
Sbjct: 742 IRVAKSLTTVAASSFLLTLEAADSGDPERK 771


>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1013

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 437 DQNGDRDAYGDEDD 478
           D NGD D YGD+DD
Sbjct: 489 DNNGDDDDYGDDDD 502


>SB_42885| Best HMM Match : DUF983 (HMM E-Value=9.7)
          Length = 152

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/90 (24%), Positives = 34/90 (37%)
 Frame = +2

Query: 368 DDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNP 547
           DD  D    + +   Y     D D N D++   D+DD  +    +   + N      F+ 
Sbjct: 6   DDDYDADDDDDNTSFYNNYDNDDDNNDDKNDDADKDDDND----VDDEDDN----NSFDS 57

Query: 548 KYNQRLKMGDPVKDDERKVFSSDDATDSTS 637
            Y       D   DD  K + +DD  D+ S
Sbjct: 58  DYGNDDDNNDDNNDDADKDYDNDDKDDNNS 87


>SB_12642| Best HMM Match : Pkinase (HMM E-Value=5.3e-07)
          Length = 253

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
 Frame = +2

Query: 347 LEFRLILDDKKDC---KIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWES 517
           L+ R I   KK+    ++I +H         D D +   D+ GD DD+   W F +    
Sbjct: 123 LKHRFIKTAKKNAYLVELIERHKKWKQNNHDDDDSSSGDDSDGDNDDNGMDWDFNTFKGP 182

Query: 518 NRVYFKIFNPKYNQRLKMGDPVKDDERKVFSSDDATDS 631
             +      P +    K G+ V   +R + S D   D+
Sbjct: 183 KNM------PNFKDSAKNGE-VSSSDRTMQSGDGGDDN 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,475,703
Number of Sequences: 59808
Number of extensions: 419471
Number of successful extensions: 1436
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)