Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k04
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01130.1 68415.m00021 helicase domain-containing protein simi...    31   0.67 
At1g03530.1 68414.m00334 expressed protein similar to hypothetic...    31   0.67 
At1g47970.1 68414.m05343 expressed protein                             29   2.0  
At3g51940.1 68416.m05697 expressed protein                             29   3.6  
At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein ...    28   4.7  
At4g35810.1 68417.m05088 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   4.7  
At2g26470.1 68415.m03176 expressed protein contains PF02586: Unc...    28   4.7  
At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containi...    28   4.7  
At5g12230.1 68418.m01435 expressed protein                             28   6.2  
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot...    27   8.2  
At2g30090.1 68415.m03662 GCN5-related N-acetyltransferase (GNAT)...    27   8.2  

>At2g01130.1 68415.m00021 helicase domain-containing protein similar
           to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
           GI:5881579; contains Pfam profiles PF04408: Helicase
           associated domain (HA2), PF00271: Helicase conserved
           C-terminal domain
          Length = 1112

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
 Frame = +2

Query: 125 DSGKSDRKLYNSVITADYDDATKRCEQLQSEPDGSYIIKNTVTELLNNAESNTINFSYKL 304
           D    DR+   +   AD DD  KR   L  +     +I     +  +  +   +  +  L
Sbjct: 39  DRVSEDRQPEGTFHCADLDDWNKRFSMLLKDSLKQEVISREKKDRRDFDKLAALATTLGL 98

Query: 305 WTTGHQNIVQ-SCFPL-EFRLILDDKKDCKIINKHDDL 412
           ++  +  +V  S  PL  +R  LDDKK  + +N H DL
Sbjct: 99  YSHAYAKVVVFSKIPLPNYRFDLDDKKPQREVNLHTDL 136


>At1g03530.1 68414.m00334 expressed protein similar to hypothetical
           protein GB:O14360
          Length = 797

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 368 DDKKDCKIINKHDDLYMTLSKDLD-QNGDRDAYGDEDD 478
           ++K +  ++ K DDL   L ++LD +NGD D   ++DD
Sbjct: 282 EEKFEHMVVGKEDDLAGDLKRNLDEENGDDDIEDEDDD 319


>At1g47970.1 68414.m05343 expressed protein
          Length = 198

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 368 DDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDD 478
           DD  D +++       +  ++D D+ GD D  GD+DD
Sbjct: 62  DDDDDVQVLQSLGGPPVQSAEDEDEEGDEDGNGDDDD 98


>At3g51940.1 68416.m05697 expressed protein 
          Length = 453

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 440 QNGDR-DAYGDEDDHKNSWKFMSSWESNRVYF 532
           QN +R D+YG   ++KNSW     +++ +V F
Sbjct: 419 QNKERVDSYGYHSNYKNSWPRRDDYQNRKVNF 450


>At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 493

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 401 HDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESN 520
           HDD ++  S D D + D D   D+DD +NS      W+SN
Sbjct: 181 HDDEFI--SSDYDDDDDFDDDDDDDDDENS----ELWDSN 214


>At4g35810.1 68417.m05088 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Rattus norvegicus [GI:474940], Mus
           musculus [SP|Q60715], Homo sapiens [GI:18073925];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 290

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 395 NKHDDLYMTLSKDLDQNGDRDAYGDEDD-HKNSWKFMSSWESNRVYFKIF 541
           NK   + M L+  +    +R+++GDE+D + + W  + SWE     +  F
Sbjct: 46  NKTSSMPMDLTTIVQTIQERESFGDEEDGNGDRWLEVISWEPRAFVYHNF 95


>At2g26470.1 68415.m03176 expressed protein contains PF02586:
           Uncharacterized ACR, COG2135; weak similarity to NF-M
           protein (GI:205688) [Rattus norvegicus]
          Length = 487

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
 Frame = +2

Query: 56  KLKILTTLSVIIATFFNMSVEASDSGKSDRKLYNSVITAD-----------YDDATKRCE 202
           ++ + T+ + +I+ FF+     +D G  + K  ++ I  D           + D+ K+ E
Sbjct: 232 QIPLKTSQNSLISKFFSTKQPKTDEGDKETKSTDANIIVDLKKEPTAEKDTFSDSIKKIE 291

Query: 203 QLQSEPDGSYIIKNTVTELLNNAE 274
           +L  E D S + KN   + +  AE
Sbjct: 292 ELDGEKDMSNVAKNLEFQEIVKAE 315


>At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 802

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
 Frame = +2

Query: 455 DAYGDEDDHKNSWKFMSSWESNRV---------YFKIFNPKYNQRLKMGDPVKDDERKVF 607
           D+   EDDH   ++ +   +S+ +         + +I NP++N+  ++G+   D+E  V 
Sbjct: 45  DSSSQEDDHFGEFRQLGFGKSSALNATSVGDPEFGEIRNPRFNEIDELGEDDDDEEGNVT 104

Query: 608 SSDDATD 628
           S D+  D
Sbjct: 105 SGDELDD 111


>At5g12230.1 68418.m01435 expressed protein 
          Length = 221

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 371 DKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 490
           DK   +   KH   +   SKD D++ DRD   D++ H +S
Sbjct: 136 DKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDS 175


>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 813

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +2

Query: 101 FNMSVEASDSGKSDRKLYNSVITADYDDAT--KRCEQLQSEPDGSYIIKNTVTELLNNAE 274
           F    E+  SG S +   ++ +TA  + +T  ++C  L S  +  Y ++  V  L N ++
Sbjct: 16  FEAPEESEGSGSSAQ--IDTEVTASENSSTPARKCIMLNSNDEDPYGVQRQVISLYNMSQ 73

Query: 275 SNTINFSYKL 304
           S   +  Y+L
Sbjct: 74  SERKDLIYRL 83


>At2g30090.1 68415.m03662 GCN5-related N-acetyltransferase (GNAT)
           family protein contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 386

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 404 DDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVY 529
           DD+   L   L   G   AY +  D+  SW  +S W+S++V+
Sbjct: 203 DDINKILRNKLSI-GTWVAYYNNVDNTRSWAMLSVWDSSKVF 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,463,941
Number of Sequences: 28952
Number of extensions: 276591
Number of successful extensions: 875
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)