Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k03
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 29 0.86
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 27 2.0
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 26 4.6
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 4.6
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 26 6.1
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 6.1
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 26 6.1
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 26 6.1
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 26 6.1
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 26 6.1
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 26 6.1
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 8.0
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 8.0
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 28.7 bits (61), Expect = 0.86
Identities = 13/62 (20%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 29 TSSQKEPRYIDELDEVLPHLPKVKELAKKFVSMENLSEPVKVP-QPYSRRRRSKENILKD 205
T + +Y+D L E H+P+++ +A+ N+ + ++ + + +R +ENI +
Sbjct: 356 TREENRLKYLDSLRERYKHIPEIRRIARHRHLPTNVKKAAEIKREEINSLKRREENIRRH 415
Query: 206 TQ 211
++
Sbjct: 416 SK 417
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.5 bits (58), Expect = 2.0
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = +2
Query: 59 DELDEVLPHLPKVKELAKKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTKQVYMHSL 238
DE V+ +P++ E + +++LSE +V +R R K N K + ++ M L
Sbjct: 336 DEQKTVVEEIPEMDEEERLDQELQDLSEAERVK---LKRERRKANQRKQREIVRMQMGML 392
Query: 239 TARSISKEFRDELKLSMPTPITV-PGGSKEIPEGTEEVTK 355
I E + S+ T G KE+ GT VT+
Sbjct: 393 APMDIGLEHEAMGEDSLFGLATAEKHGLKELENGTLPVTE 432
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 4.6
Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Frame = +2
Query: 65 LDEVLPHLPKVKELAKKFVSMENLSEPV-KVPQPYSRRRRSKENILKDTQTKQVYMHSLT 241
L+E+L ++ +F+ +EN+ +PV + P+ ++++ D + + + +
Sbjct: 81 LEEILESFKVIRPTLFEFLKVENVPKPVLQAPETVI----AQDSASGDEEWEDDLASNSS 136
Query: 242 ARSISKE-FRDELKLSMPTPITVPGGSKEIPEG--TEEVTKESSRPGSPMPEPGTLKNK 409
SI+K+ RD K + P S +P + + + P SP KNK
Sbjct: 137 PASIAKKTSRDSKKRKREDLVHCPACSNLVPHNQINQHLDSCLNSPSSPSSSSSPYKNK 195
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 248 SISKEFRDELKLSMPTPIT-VPGGSKEI-PEGTEEVTKESSRPGSPMPEPGTL 400
S+SK D +S+P P+T P S + P +V + + P +P P L
Sbjct: 522 SVSKNIADGAVISIPKPLTPKPSDSNSLYPLPHSKVGRRKNIPAITVPPPSIL 574
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 161 PYSRRRRSKENILKDTQTKQVYMHSLTARSISKEFRDELK 280
P +R R ENI ++K+VY ++ +E + ELK
Sbjct: 40 PEKKRLRLSENIPATIESKRVYDETIIEDKPDEELQAELK 79
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 477 HSTSYLISKIPRLQIFYFKLLKYQTQD 557
H TS ++S+ PRL+I YF T D
Sbjct: 569 HPTSGIVSRHPRLRIAYFAQHHVDTLD 595
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 143 PVKVPQPYSRRRRSKENILKDTQTKQVYMHSL 238
PV V +P +R RSK LKD +T++ YM L
Sbjct: 272 PVIVVRPDRKRVRSKNKRLKD-KTRKSYMEIL 302
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 35 SQKEPRYIDELDEVLPHLPKVKELAKKFVSMENLSEPV 148
++ EP+ ++LDE+ P KVKE+ + S NL E +
Sbjct: 185 NESEPKATEDLDELSPGSYKVKEIHIR--SPSNLIEAI 220
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 167 SRRRRSKENILKDTQTKQVYMHSLTARSISKEFRDELKLSMPTPITVPGGSKEI 328
+R +E + K+ K+ S ++ K + S+P P+ VPG +K I
Sbjct: 7 TRSSTKREEVSKNGVEKRELDESDVMKNGKKPVKRAKVSSLPKPVRVPGSAKRI 60
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/101 (15%), Positives = 41/101 (40%)
Frame = +2
Query: 62 ELDEVLPHLPKVKELAKKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTKQVYMHSLT 241
E + +P L K + E + E + + S + + + K V ++
Sbjct: 555 EQTSITSGVPPSNRLKKHVSTPEKIVEERSIDEVSQSNTPSSKQLPQSVDGKTVTANA-N 613
Query: 242 ARSISKEFRDELKLSMPTPITVPGGSKEIPEGTEEVTKESS 364
+ +++K+ + L+ P P+ +IP+ + + +S+
Sbjct: 614 STTVAKQPTSNVALTRPKPVRTATSQSKIPKPVKHIPSDSN 654
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 23 EDTSSQKEPRYIDELDEVLPHLP 91
EDT S +P+ +D E + HLP
Sbjct: 119 EDTISFSKPKTVDNYPEYIQHLP 141
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/61 (19%), Positives = 29/61 (47%)
Frame = +2
Query: 38 QKEPRYIDELDEVLPHLPKVKELAKKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTK 217
+K Y +ELD++ P+L ++ L + L E + ++ + + N +K + +
Sbjct: 1009 EKLREYSEELDQMSPNLRAIERLETVETRLAKLDEEFAAARKAAKNAKERFNAVKQKRLQ 1068
Query: 218 Q 220
+
Sbjct: 1069 K 1069
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 53 YIDELDEVLPHLPKVKELAKKFVSMENL 136
++DEL+++ P L ++KE K + S + L
Sbjct: 219 FLDELNQLKPQLNEIKEKLKTYPSSQLL 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,603
Number of Sequences: 5004
Number of extensions: 59736
Number of successful extensions: 189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -