Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k03
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0192 - 21450158-21450276,21451084-21451573,21451750-214518... 30 2.1
12_01_0322 - 2451062-2451601,2451691-2451792,2452237-2452329,245... 29 2.7
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 29 4.8
11_04_0329 - 16442298-16443734 29 4.8
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 29 4.8
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 29 4.8
01_06_1735 - 39545146-39545451,39545810-39545945,39546072-395462... 29 4.8
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 6.3
03_05_0567 - 25672780-25672965,25673043-25673135,25673237-256732... 28 6.3
12_01_0773 - 7039294-7039422,7039440-7039479,7039557-7039649,703... 28 8.4
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540... 28 8.4
02_02_0129 + 7055896-7056135,7056404-7056771,7056816-7056928,705... 28 8.4
01_01_1015 + 8029884-8030676,8030755-8030771 28 8.4
>09_06_0192 -
21450158-21450276,21451084-21451573,21451750-21451862,
21451992-21452376,21452461-21452529,21453165-21453264,
21454465-21454637,21454737-21454782,21454879-21454954,
21455160-21455196,21455799-21456041
Length = 616
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/100 (24%), Positives = 44/100 (44%)
Frame = +2
Query: 89 PKVKELAKKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTKQVYMHSLTARSISKEFR 268
P + +L K+ + +E L EP P P RR ++ N + TA +E +
Sbjct: 14 PSLLDLQKRTLRLEKLQEPPPPPPPPQPRRSTRRNPAGVDSGDEG-----TAPGGRREKK 68
Query: 269 DELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSPMPE 388
L + +P +++ +G+EE S P +P+P+
Sbjct: 69 LRLVMGLPDGSAKGEKTRKATDGSEE--PSDSGPTTPLPD 106
>12_01_0322 -
2451062-2451601,2451691-2451792,2452237-2452329,
2452443-2452589,2453063-2453150,2453338-2453426,
2453698-2453763,2453962-2454076,2454269-2454462
Length = 477
Score = 29.5 bits (63), Expect = 2.7
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 1/129 (0%)
Frame = +2
Query: 23 EDTSSQKEPRYIDELDEVLPHLPKVKEL-AKKFVSMENLSEPVKVPQPYSRRRRSKENIL 199
E SS E Y D + L V E + + +N+ E K +P+S+ ++ + +
Sbjct: 298 EVRSSTNEDYYEDPVPNKQNPLATVMESNPPQLILPQNMIEEDKASEPFSQAEGAESDNV 357
Query: 200 KDTQTKQVYMHSLTARSISKEFRDELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSP 379
QTK Y +L+ S D + ++ + G SK G K S+ G
Sbjct: 358 PKVQTKPTYQRTLSGGLKSPRAADVPREAILERVKSKGESKSYQLGHRLSLKWSTGVG-- 415
Query: 380 MPEPGTLKN 406
P G +K+
Sbjct: 416 -PRIGCVKD 423
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 20 DEDTSSQKEPRYIDELDEVLPHLPK 94
D+D +SQ++ + I ELDE++ H P+
Sbjct: 595 DQDWNSQQKAKSITELDELIRHSPE 619
>11_04_0329 - 16442298-16443734
Length = 478
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = -3
Query: 324 SLEPPGTVIGVGIDNLSSSRNSFEMLLAVRLCIYTCFVCVSFKIFSLLRRRRE*GCGTLT 145
+L PPG V+ + + +L + NSF + + +R + + + FSLLRR G G+ +
Sbjct: 63 ALSPPGAVLRL-LASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRGSGGGGGSYS 121
Query: 144 -GSLRFSML 121
G F+ L
Sbjct: 122 PGRHTFTFL 130
>02_04_0625 -
24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 290 PTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEPG 394
P P++VPGG G E ++ P P P PG
Sbjct: 22 PAPLSVPGGRAAFLSGAAEEVAQADAP--PPPPPG 54
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 290 PTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEPGTLKNK 409
P P P GS + G E+ +E S P P P P + K
Sbjct: 26 PEPTVAPEGSSDSDVGDED--EEYSSPSDPCPSPSPKRRK 63
>01_06_1735 -
39545146-39545451,39545810-39545945,39546072-39546214,
39546700-39546828,39547198-39547446,39548032-39548403
Length = 444
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Frame = +2
Query: 2 SPCRDLDEDTSSQKEPRY--IDELDEVLP--HLPKVKELAKKFVSMENLSEPVK 151
S CR L+E+TS+ ++ Y +DEL + +L +V+++ + V++ + V+
Sbjct: 199 SACRSLEEETSTLEQEAYPALDELTSKISTLNLERVRQIKSRLVAISGRVQKVR 252
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 290 PTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEPGTLKNK 409
P P P GS + G E+ +E S P P P P + K
Sbjct: 26 PEPTVPPEGSSDSDVGDED--EECSSPSDPCPSPSPKRRK 63
>03_05_0567 -
25672780-25672965,25673043-25673135,25673237-25673297,
25673385-25673495,25673640-25673825,25673909-25675287,
25675393-25675776,25675813-25676061,25676147-25676386
Length = 962
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 290 PTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEPGTLKNK 409
P P P GS + G E+ +E S P P P P + K
Sbjct: 26 PEPTVPPDGSSDSDVGDED--EEYSSPSDPCPSPSPKRRK 63
>12_01_0773 -
7039294-7039422,7039440-7039479,7039557-7039649,
7039900-7040010,7040091-7040342,7040407-7040903,
7040923-7041777,7041883-7042143,7042183-7042551,
7042637-7042876
Length = 948
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 290 PTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEPGTLKNK 409
P P P GS + G E+ +E S P P P P + K
Sbjct: 26 PEPTVPPDGSSDNDVGDED--EEYSSPSDPCPSPSPKRRK 63
>03_05_0704 -
26953474-26953643,26953770-26953801,26953915-26954009,
26954107-26954180,26954283-26954412,26954522-26954585,
26954660-26954722,26954795-26954937,26955386-26955523,
26955610-26955731,26955805-26955976,26956559-26956630,
26956753-26956887,26956987-26957103,26957184-26957316,
26957455-26957561,26958060-26958077,26958235-26958379,
26958472-26958671,26960744-26961421
Length = 935
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 260 EFRDELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEP 391
E + ++ +S P G S +GT+ V +E S+ +P P P
Sbjct: 135 EMKGKMVVSGGAPPAGQGSSLAAAQGTDNVKREPSQVAAPAPAP 178
>02_02_0129 +
7055896-7056135,7056404-7056771,7056816-7056928,
7057014-7057118,7057283-7057860,7057889-7058346,
7058430-7058681,7058762-7058872,7058960-7059020,
7059122-7059214,7059292-7059477
Length = 854
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 290 PTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEPGTLKNK 409
P P+ P GS G E+ +E S P P P P + K
Sbjct: 26 PEPMVPPEGSSNSDVGDED--EEYSSPSDPCPSPSPKRRK 63
>01_01_1015 + 8029884-8030676,8030755-8030771
Length = 269
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 9 VEISTRTLQARRNQGI*MSWMKSYPIYLK*KSWPRNSSAWRTSANPLRCRS 161
V+++ R L+A + P+ K K+ P+NS+A R+S PL+ S
Sbjct: 175 VDVACRVLEAEARDAKEQAAAPPSPVLTK-KTTPKNSAANRSSDKPLKINS 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,525,142
Number of Sequences: 37544
Number of extensions: 383672
Number of successful extensions: 1122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -