Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k03
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_4547| Best HMM Match : Auxin_resp (HMM E-Value=7.6) 32 0.40
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29) 31 0.69
SB_35554| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_24263| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_56482| Best HMM Match : HEAT (HMM E-Value=1.9e-16) 29 3.7
SB_41916| Best HMM Match : DUF164 (HMM E-Value=0.8) 29 4.9
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 28 6.5
SB_42915| Best HMM Match : rve (HMM E-Value=1.4e-38) 28 8.5
>SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 20 DEDTSSQKE-PRYIDELDEVLPHLPKVKELAKKFVSMENLSEPVKVPQPYSRRRRSKENI 196
DED E + L+ LP ++ + FVS N+ E V+ + Y +R +EN
Sbjct: 86 DEDDRYDNEIEKMRSPLERTEKMLPVIRSKERSFVS-SNIKEKVESLEEYKKRAEFQENA 144
Query: 197 LKDTQTKQV 223
L + TK++
Sbjct: 145 LTKSSTKEI 153
>SB_4547| Best HMM Match : Auxin_resp (HMM E-Value=7.6)
Length = 208
Score = 32.3 bits (70), Expect = 0.40
Identities = 23/101 (22%), Positives = 40/101 (39%)
Frame = +2
Query: 140 EPVKVPQPYSRRRRSKENILKDTQTKQVYMHSLTARSISKEFRDELKLSMPTPITVPGGS 319
+P K+P+ + E + + + +S + FRD KL +P PG
Sbjct: 73 DPRKLPEKSPEKFPGPEKVARKVTREVSGTRESCPKSHPRSFRDPRKLPEKSPEKFPGPE 132
Query: 320 KEIPEGTEEVTKESSRPGSPMPEPGTLKNKLAFFESLKNKF 442
K + T EV+ +R P P + +++ E KF
Sbjct: 133 KVARKVTREVS--GTRESCPKSHPRSFRDQRKLPEKSPEKF 171
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = +2
Query: 140 EPVKVPQPYSRRRRSKENILKDTQTKQVYMHSLTARSISKEFRDELKLSMPTPITVPGGS 319
+P K+P+ + E + + + +S + FRD+ KL +P PG
Sbjct: 116 DPRKLPEKSPEKFPGPEKVARKVTREVSGTRESCPKSHPRSFRDQRKLPEKSPEKFPGPE 175
Query: 320 KEIPEGTEEV--TKESSRPGSP 379
K + T EV T+ES P
Sbjct: 176 KVARKVTREVSGTRESCPKSHP 197
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +2
Query: 245 RSISKEFRDELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEPGTLKNKLAFFE 424
+S + FRD KL +P PG K + T EV+ +R P P + ++ E
Sbjct: 65 KSHPRSFRDPRKLPEKSPEKFPGPEKVARKVTREVS--GTRESCPKSHPRSFRDPRKLPE 122
Query: 425 SLKNKF 442
KF
Sbjct: 123 KSPEKF 128
>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
Length = 1890
Score = 31.5 bits (68), Expect = 0.69
Identities = 32/100 (32%), Positives = 42/100 (42%)
Frame = +2
Query: 167 SRRRRSKENILKDTQTKQVYMHSLTARSISKEFRDELKLSMPTPITVPGGSKEIPEGTEE 346
SRRRRS+ENIL TK + I + E S GG+K E+
Sbjct: 597 SRRRRSRENILDKNLTKSDASGGGSPSGIRIQPPPESSASSLPSTDGTGGTKAERTLNEK 656
Query: 347 VTKESSRPGSPMPEPGTLKNKLAFFESLKNKFSNK*SGAV 466
KE RP +P P+ GT ++ + F K SG V
Sbjct: 657 AGKE--RPKTPEPQ-GTGESTTPSTQGWAEIFIRKASGNV 693
>SB_35554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 31.5 bits (68), Expect = 0.69
Identities = 23/101 (22%), Positives = 39/101 (38%)
Frame = +2
Query: 140 EPVKVPQPYSRRRRSKENILKDTQTKQVYMHSLTARSISKEFRDELKLSMPTPITVPGGS 319
+P K+P+ + E + + + +S + FRD KL +P PG
Sbjct: 308 DPRKLPEKSPEKFPGPEKVARKVTREVSGTRESCPKSHPRSFRDPRKLPEKSPEKFPGPE 367
Query: 320 KEIPEGTEEVTKESSRPGSPMPEPGTLKNKLAFFESLKNKF 442
K + T EV+ +R P P + ++ E KF
Sbjct: 368 KVARKVTREVS--GTRESCPKSHPRSFRDPRKLPEKSPEKF 406
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +2
Query: 245 RSISKEFRDELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEPGTLKNKLAFFE 424
+S + FRD KL +P PG K + T EV+ +R P P + ++ E
Sbjct: 300 KSHPRSFRDPRKLPEKSPEKFPGPEKVARKVTREVS--GTRESCPKSHPRSFRDPRKLPE 357
Query: 425 SLKNKF 442
KF
Sbjct: 358 KSPEKF 363
>SB_24263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +2
Query: 233 SLTARSISKEFRD---ELKLSMPTPITVPGGSKEIPEG-TEEVTKESSRPGSPMPEPGT 397
SL A++++ + R E K S P VP + P G T E K S PG+ EPG+
Sbjct: 27 SLCAKTLNDQSRGRSAEPKPSRPVSPGVPSTHPDSPPGDTSEGDKPSPEPGNRKAEPGS 85
>SB_56482| Best HMM Match : HEAT (HMM E-Value=1.9e-16)
Length = 425
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +2
Query: 200 KDTQTKQVYMHSLTARSISKEFRD----ELKLSMPTPITVPGGSKEIPEGTEEVTKESSR 367
K+T + ++ + AR +SKEF+D EL+ I++ G E+ T+EV +E R
Sbjct: 329 KETSQQIAHLENQIARELSKEFQDNSNMELEKVSSGHISIVG--DEVSSSTQEVCEEKPR 386
>SB_41916| Best HMM Match : DUF164 (HMM E-Value=0.8)
Length = 391
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 92 KVKELAKKFVSMENLSEPVK-VPQPYSRRRRSKENILKDTQTKQVYMHSLTA 244
KV E + +F + L E ++ V Y +RR + +D T QV + LTA
Sbjct: 126 KVDETSDEFDEKQRLEEQMRAVMDKYKYKRRQIRELQEDLGTMQVTLDKLTA 177
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 28.3 bits (60), Expect = 6.5
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 38 QKEPRYIDE-LDEVLPHLPKVKELAKKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQT 214
+KE Y + +D++L L K + + + + N+S PVKV P++ +R + +
Sbjct: 1116 EKEKLYKGQSVDDLLKMLKKKRPSSNVPIPV-NVSTPVKVKSPFTGKRLDNNTL---SLM 1171
Query: 215 KQVYMHSLTARSISKEFRDELK 280
++V H L +KE R + K
Sbjct: 1172 ERVVQHLLKDERKAKELRKKHK 1193
>SB_42915| Best HMM Match : rve (HMM E-Value=1.4e-38)
Length = 610
Score = 27.9 bits (59), Expect = 8.5
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Frame = +2
Query: 26 DTSSQKEPRYIDELDEVLPHLPKVKELAKKFVSMENLSEPVKVPQPYS-RRRRSKENILK 202
D EP IDE DEVL L + + EN PV P+ Y ++ +L+
Sbjct: 476 DARRHAEPSGIDEGDEVL--LRQTRR--------ENKLSPVFEPEAYKVLQKTGNAVVLE 525
Query: 203 DTQTKQVYMHSLTARSISKEFRDELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSPM 382
D+ + + + K +PTP + + PE + T +S+ + M
Sbjct: 526 DSDGNRKMRNVAQMKKFIKPQEAVAADMLPTPPEIAQEHQTAPETQNQSTLDST---AEM 582
Query: 383 P-EPGTLKNK 409
P PG+L N+
Sbjct: 583 PASPGSLANQ 592
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,332,592
Number of Sequences: 59808
Number of extensions: 435339
Number of successful extensions: 1280
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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