Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10k03
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23515-4|AAU87816.1| 333|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z74475-2|CAA98958.4| 385|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 30 1.9
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 30 1.9
U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal enha... 29 2.5
AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal en... 29 2.5
Z81504-1|CAB04116.1| 426|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF000196-9|AAO61448.1| 395|Caenorhabditis elegans Hypothetical ... 29 4.3
AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical ... 29 4.3
AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical ... 29 4.3
Z82055-2|CAB04844.1| 369|Caenorhabditis elegans Hypothetical pr... 28 5.7
U23169-5|AAC46698.2| 316|Caenorhabditis elegans Hypothetical pr... 28 5.7
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 28 5.7
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 28 5.7
Z81481-5|CAB63436.1| 405|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z54271-8|CAA91038.1| 185|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical pr... 28 7.5
U97552-4|AAX55684.1| 666|Caenorhabditis elegans Hypothetical pr... 27 9.9
U97552-3|AAQ01521.1| 663|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF099917-8|AAC68779.2| 457|Caenorhabditis elegans Hypothetical ... 27 9.9
>U23515-4|AAU87816.1| 333|Caenorhabditis elegans Hypothetical
protein R144.12 protein.
Length = 333
Score = 31.1 bits (67), Expect = 0.81
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -2
Query: 325 LFGASWYSDRSWHRQFKFVTKL 260
L GA+WY+++ WH ++++T +
Sbjct: 232 LLGAAWYANKQWHLLYRYLTDI 253
>Z74475-2|CAA98958.4| 385|Caenorhabditis elegans Hypothetical
protein R04F11.3 protein.
Length = 385
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/87 (22%), Positives = 38/87 (43%)
Frame = +2
Query: 149 KVPQPYSRRRRSKENILKDTQTKQVYMHSLTARSISKEFRDELKLSMPTPITVPGGSKEI 328
K+P+ +++S + +K + K S S + E K S P G
Sbjct: 125 KLPEQLKPQKKSDSSNVKVEKEKSTEQKPTIEPSTSSKSAIETKKSSIAPPKKQGTLSMF 184
Query: 329 PEGTEEVTKESSRPGSPMPEPGTLKNK 409
+ TE+ T+++ + SP+P+ KN+
Sbjct: 185 SKKTEKKTEKTEKSQSPVPQDQEKKNR 211
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = +2
Query: 110 KKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTKQV----YMHSLTARSISKEFRDEL 277
++F S+ NL + +PY + N+ K QV + +TA S + +
Sbjct: 103 EEFQSITNLKNFSSLVKPYILKVNPGTNVTKMYPLFQVKYKEFQDHMTAHGKSIQKQQRA 162
Query: 278 KLSMPTPITVPGGSKEIPEGTEEVTKESSRPGS 376
K +P P+ V K IP+ T + R GS
Sbjct: 163 KF-VPVPVPVTPQEKIIPQKTRSSARRKRRDGS 194
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = +2
Query: 110 KKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTKQV----YMHSLTARSISKEFRDEL 277
++F S+ NL + +PY + N+ K QV + +TA S + +
Sbjct: 103 EEFQSITNLKNFSSLVKPYILKVNPGTNVTKMYPLFQVKYKEFQDHMTAHGKSIQKQQRA 162
Query: 278 KLSMPTPITVPGGSKEIPEGTEEVTKESSRPGS 376
K +P P+ V K IP+ T + R GS
Sbjct: 163 KF-VPVPVPVTPQEKIIPQKTRSSARRKRRDGS 194
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = +2
Query: 110 KKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTKQV----YMHSLTARSISKEFRDEL 277
++F S+ NL + +PY + N+ K QV + +TA S + +
Sbjct: 103 EEFQSITNLKNFSSLVKPYILKVNPGTNVTKMYPLFQVKYKEFQDHMTAHGKSIQKQQRA 162
Query: 278 KLSMPTPITVPGGSKEIPEGTEEVTKESSRPGS 376
K +P P+ V K IP+ T + R GS
Sbjct: 163 KF-VPVPVPVTPQEKIIPQKTRSSARRKRRDGS 194
>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
protein Y20F4.4 protein.
Length = 1319
Score = 29.9 bits (64), Expect = 1.9
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
Frame = +2
Query: 59 DELDEVLPHLPKVKELAKKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTKQVYMHSL 238
DE DE L + K E + + E + + + RR+ +++ T T +
Sbjct: 116 DEFDEYLKY-KKANEKHQSY-GTPLYGEEEQQTRHQPQHRRASTPLVRTTPTPPSTLAPR 173
Query: 239 TARSISKEFRDELKLSMPTPITVPGGSKEIPEGTEE-------VTKESSRP----GSPMP 385
R++ +F S P P+ PG P G++E +E++RP G PMP
Sbjct: 174 DLRALPLDFPIPANFSQPPPVIPPGYFFNAPTGSQEHHQHYAPQPQENARPITPHGYPMP 233
Query: 386 E 388
+
Sbjct: 234 Q 234
>U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal
enhancer binding protein1, isoform a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/61 (19%), Positives = 29/61 (47%)
Frame = +2
Query: 20 DEDTSSQKEPRYIDELDEVLPHLPKVKELAKKFVSMENLSEPVKVPQPYSRRRRSKENIL 199
D+D + K P+ ++ LP + + ++ F + P +P P +++ + N+L
Sbjct: 199 DDDENEYKMPKLETDISCFLPFINNMVKVEPPFSHTPTIQIPQPIPTPIQHQQQEQSNLL 258
Query: 200 K 202
+
Sbjct: 259 Q 259
>AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal
enhancer binding protein-1 protein.
Length = 425
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/61 (19%), Positives = 29/61 (47%)
Frame = +2
Query: 20 DEDTSSQKEPRYIDELDEVLPHLPKVKELAKKFVSMENLSEPVKVPQPYSRRRRSKENIL 199
D+D + K P+ ++ LP + + ++ F + P +P P +++ + N+L
Sbjct: 197 DDDENEYKMPKLETDISCFLPFINNMVKVEPPFSHTPTIQIPQPIPTPIQHQQQEQSNLL 256
Query: 200 K 202
+
Sbjct: 257 Q 257
>Z81504-1|CAB04116.1| 426|Caenorhabditis elegans Hypothetical
protein F15H9.1 protein.
Length = 426
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 215 KQVYMHSLTARSISKEFRD---ELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSPMP 385
K+ ++H + +I K F + + + TPI PG S +PE ++ +E S +P
Sbjct: 141 KKAWLHGICKNNIKKLFSSIHTPMLVEVETPI--PGSSVCVPEKKTQILEEPSFVYMFIP 198
Query: 386 EPGTLKNKL 412
G++ KL
Sbjct: 199 SNGSVVEKL 207
>AF000196-9|AAO61448.1| 395|Caenorhabditis elegans Hypothetical
protein B0041.2c protein.
Length = 395
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 384 GIGLPGLLD--SLVTSSVPSGISLEPPGTVIGVGIDNLSSS 268
G G G+LD SL +++V G S+ PP +GVG SSS
Sbjct: 142 GYGDNGVLDGGSLWSAAVMDGSSMVPPHPTMGVGSSASSSS 182
>AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical
protein B0041.2b protein.
Length = 624
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 384 GIGLPGLLD--SLVTSSVPSGISLEPPGTVIGVGIDNLSSS 268
G G G+LD SL +++V G S+ PP +GVG SSS
Sbjct: 371 GYGDNGVLDGGSLWSAAVMDGSSMVPPHPTMGVGSSASSSS 411
>AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical
protein B0041.2a protein.
Length = 706
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 384 GIGLPGLLD--SLVTSSVPSGISLEPPGTVIGVGIDNLSSS 268
G G G+LD SL +++V G S+ PP +GVG SSS
Sbjct: 453 GYGDNGVLDGGSLWSAAVMDGSSMVPPHPTMGVGSSASSSS 493
>Z82055-2|CAB04844.1| 369|Caenorhabditis elegans Hypothetical
protein T26H2.2 protein.
Length = 369
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/79 (29%), Positives = 34/79 (43%)
Frame = +2
Query: 83 HLPKVKELAKKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTKQVYMHSLTARSISKE 262
HLP +L +F ++ENL K+ +P ++I K+ T TAR
Sbjct: 96 HLPSF-QLTLRFTNLENLPVSAKIAEPMGYGSVGSQDIYKEPITFSNDSLKFTARDYLCH 154
Query: 263 FRDELKLSMPTPITVPGGS 319
D + S T IT GG+
Sbjct: 155 VLDVVNKSEIT-ITDAGGA 172
>U23169-5|AAC46698.2| 316|Caenorhabditis elegans Hypothetical
protein C29H12.6 protein.
Length = 316
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = +2
Query: 158 QPYSRRRRSKENILKDTQTKQVYMHSLTARSISKEFRDELKLSMPTPITVPGGSKEIPEG 337
QP RR+ S +++ + + + S+ + RDELK +P I P +P
Sbjct: 30 QPDERRKASSPSVVPMSSKRIAQPMRAASHSVVRHSRDELK-PLPVSIAFPPPPTSMPPP 88
Query: 338 TEEVTKESSRPGS 376
T S+ GS
Sbjct: 89 MITSTSSSTCNGS 101
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 14 DLDEDTSSQKEPRYIDELDEVLPHLPKVKELAKKFVSMENLSEPV 148
D DED Q++ + ++ + + K KE+A+ S +NL PV
Sbjct: 442 DDDEDRGGQQKETVEERMERIKLRIAKRKEVAQANRSTDNLRSPV 486
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 14 DLDEDTSSQKEPRYIDELDEVLPHLPKVKELAKKFVSMENLSEPV 148
D DED Q++ + ++ + + K KE+A+ S +NL PV
Sbjct: 442 DDDEDRGGQQKETVEERMERIKLRIAKRKEVAQANRSTDNLRSPV 486
>Z81481-5|CAB63436.1| 405|Caenorhabditis elegans Hypothetical
protein C38D9.7 protein.
Length = 405
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +2
Query: 77 LPHLPKVKELAKKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTKQVYMHSLTARSIS 256
+PH + KKFV N VPQ S E + + K L AR +S
Sbjct: 87 VPHKISEIDWCKKFVEYFN-----GVPQKPSLIYNMPEKVWNEICAKMELYDRLVARKVS 141
Query: 257 KEFRDEL 277
+ FRD++
Sbjct: 142 RNFRDKI 148
>Z54271-8|CAA91038.1| 185|Caenorhabditis elegans Hypothetical
protein F21D5.9 protein.
Length = 185
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 257 KEFRDELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSP-MPEPGTLKNKL 412
++F L + P PITVP + P T + SS S + P T+ N L
Sbjct: 84 RQFISTLCHASPAPITVPLPRVQQPRATTSTSSSSSTSSSSGVTVPSTMNNPL 136
>Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical
protein F54C9.9 protein.
Length = 740
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +2
Query: 20 DEDTSSQKEPRYIDELDEVLPHLPKVKELAKKFVSMENLSEPVKV--PQPYSRRRRSKEN 193
+ D +++ +D+ DE +PK K+ A K + ++ K RR+SK N
Sbjct: 432 EADDDDEEDEESVDDEDE--QEVPKSKKSAMKNGKFDMVAAAQKAMSKDKNDSRRKSKRN 489
Query: 194 ILKDTQTKQVYMHSLTARSISKEFRD 271
LKD ++ + + ++ + F +
Sbjct: 490 ALKDALARKKPLFNPKEKTFEEYFNE 515
>U97552-4|AAX55684.1| 666|Caenorhabditis elegans Hypothetical
protein W05H7.4e protein.
Length = 666
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 269 DELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEP 391
D + +PTP+T P SK P E+ T GS P
Sbjct: 27 DSPAVYVPTPLTAPSTSKTTPVKPEDQTTRQKYGGSVSYSP 67
>U97552-3|AAQ01521.1| 663|Caenorhabditis elegans Hypothetical
protein W05H7.4b protein.
Length = 663
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 269 DELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEP 391
D + +PTP+T P SK P E+ T GS P
Sbjct: 27 DSPAVYVPTPLTAPSTSKTTPVKPEDQTTRQKYGGSVSYSP 67
>AF099917-8|AAC68779.2| 457|Caenorhabditis elegans Hypothetical
protein F54D10.8 protein.
Length = 457
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 38 QKEPRYIDELDEVLPHLPKVKELAKKFVSMENLSE 142
+ +PR + EL + ++ K ++ +KF SME L E
Sbjct: 287 ESQPRSVGELHVSVLNILKYEDTPEKFTSMEQLKE 321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,943,694
Number of Sequences: 27780
Number of extensions: 341651
Number of successful extensions: 1053
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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