Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10k02
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    31   0.13 
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.17 
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    30   0.29 
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.67 
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    28   1.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.1  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   2.7  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.6  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   3.6  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   4.7  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   6.3  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 86  AGVVELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLE 205
           A +V+ S    +P + DLE  +  ++LTGD  SAV+  LE
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVLSAVKACLE 576


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 542 HNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTRE 649
           +++ YN+   M TS+C+C++  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +2

Query: 71  VLAASAGVVELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIV 235
           V+ A+AG+  +   S+   N+D+  K+    L G Y +A      ++ QG+GS++
Sbjct: 91  VMIANAGIA-IPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 205 FQALTYSTVVVTGEDAVVQFVLEVLV 128
           F  +T   V+V  EDAVV+FVL +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 8/38 (21%), Positives = 22/38 (57%)
 Frame = +2

Query: 227 SIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYF 340
           +I+   V+N I+D+  +  ++C ++W G     ++ ++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +3

Query: 90  ASWNYPRTA*ALLTKTSRTNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTR 269
           AS +   T  A  T +S ++  ++S+P+T++     A +  A + +A +     + S T 
Sbjct: 228 ASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTP 287

Query: 270 DGTPWSTATS 299
             TP S+A S
Sbjct: 288 SSTPLSSANS 297


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/78 (26%), Positives = 31/78 (39%)
 Frame = +2

Query: 98  ELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRN 277
           E+     S  N  LE          D D   R ++  + Q    +++++  NL I    N
Sbjct: 404 EMGYTQKSIENDMLESFQKGVFRINDLDCLGRTNV-IQYQISRLVLKDIFFNLQIGVTFN 462

Query: 278 TMEYCYKLWVGNGQDIVK 331
            +EY   LW  NG  I K
Sbjct: 463 ILEYLRHLWSNNGDAIAK 480


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 602 RDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYN 706
           R R+V G ++A  + + W F   +Y   ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 539 AHNTKYNQYLKMSTSTCNCNARDRVVYGGNSA 634
           +HN  +N + + S ++ +  +R+ V+  GNS+
Sbjct: 616 SHNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = +2

Query: 98  ELSADSMSPSNQDLEDKLYNSILTGDYDS------AVRKSLEYESQGQGSIVQNVVNNL 256
           ELS +S++  N D+  +++  I + D         A+ K +E+ES+G  + +    N L
Sbjct: 32  ELSGESLARFNNDINRRIFELIHSHDSHERFGGILAIGKLIEFESEGDVTNLSRYANYL 90


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = -1

Query: 343 WEVLFDNILS--VADPQL---VAVLHGVPSLVNDQIVNYI 239
           W+VLF + L+  ++ P     V  LHGV + VN  + +YI
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYI 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,450
Number of Sequences: 5004
Number of extensions: 53601
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)