Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j24
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54CQ3 Cluster: Putative uncharacterized protein; n=1; ...    34   3.6  
UniRef50_A6QYI2 Cluster: Predicted protein; n=1; Ajellomyces cap...    33   4.8  
UniRef50_Q7RP13 Cluster: Homeobox-containing protein; n=2; Plasm...    33   6.3  

>UniRef50_Q54CQ3 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 686

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = -3

Query: 605 QKKWHGILENKLHIKFPLNRKAFEILQIIYLTYKYCDKKIIF*TLSTTI 459
           +KKW+ IL   L IK   N K   + +I+    KY DKKIIF T+ + +
Sbjct: 360 EKKWNSILFI-LEIKLYANPKNTTLSKILPKLIKYIDKKIIFETIISNV 407


>UniRef50_A6QYI2 Cluster: Predicted protein; n=1; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 1187

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 650 LNFKSTAVNTWEKDIQKKWHGILENKLHIKFPLNRKAF 537
           LN K   +  W       WHGIL   LH +  LN +A+
Sbjct: 678 LNLKYPTIFAWHGSHISNWHGILREGLHFRETLNGRAY 715


>UniRef50_Q7RP13 Cluster: Homeobox-containing protein; n=2;
           Plasmodium (Vinckeia)|Rep: Homeobox-containing protein -
           Plasmodium yoelii yoelii
          Length = 380

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 352 NSIKHRHANLY-YAPKYFEIACNEIEHNRRTN*KYDTIVVLNV*KMIFLSQYLYVR*IIC 528
           NS  +   NL  Y P YF+    +I  N+  N   D  + L   K +  S+Y Y   IIC
Sbjct: 122 NSNNNTKINLKSYFPDYFKFTKKKIYVNKNYNNNDDCNISLKSYKYLEYSKYSY---IIC 178

Query: 529 KISKAFRFNGNLICNLFSSI 588
           K+ K +  N   +    +S+
Sbjct: 179 KLKKIYFLNSENLYQTINSV 198


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,251,751
Number of Sequences: 1657284
Number of extensions: 9905875
Number of successful extensions: 19344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19343
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)