Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j24
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.6  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    25   10.0 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   10.0 

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -1

Query: 592  TEYWKINYILSFR*IEKLLKFYKLFTLHISIVIRKSFSKH 473
            ++Y +  Y+LS   +EK ++  KL  L  + +IRK+F +H
Sbjct: 1663 SDYIRRAYVLSE--LEKSIRMEKLLGLVETSIIRKTFLQH 1700


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 132 KCYALGTHRPLLGFDANNKRIIVINEFIHRCRLII 236
           +C+A+ T R L      NKR I+    I + R +I
Sbjct: 351 QCHAVSTLRNLAASSERNKRAIIEANAIQKLRCLI 385


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 520  IICKISKAFRFNGNLICNLFSSIPCHFF*ISFSHVLTAV 636
            II    K+     + +C L   IP +FF ++ S +++ V
Sbjct: 1869 IISSRKKSLELMNSNVCRLSMKIPQYFFLVALSQMISRV 1907


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,726
Number of Sequences: 5004
Number of extensions: 48999
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)