Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j24
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237...    31   0.84 
05_03_0403 - 13534954-13535462,13537895-13538050,13538545-13538644     29   4.5  
01_06_0328 + 28507942-28508610,28509669-28510826                       28   5.9  

>06_03_1309 +
           29223197-29223240,29223358-29223592,29223695-29223783,
           29223870-29223968,29224065-29224158,29224297-29224514,
           29224861-29224967,29225298-29225472,29225596-29225743,
           29226548-29226596,29228016-29228162,29229990-29229996,
           29230417-29230482,29230773-29231991,29232073-29233149,
           29233226-29233355,29233519-29233617,29233817-29233878,
           29234429-29234533
          Length = 1389

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 596 WHGILENKLHIKFPLNRKAFEILQIIYLTYKYC 498
           W G+   K H   PLN +AFEI  +I++T++ C
Sbjct: 422 WSGL--EKFH-DLPLNMQAFEIYHLIHVTFEIC 451


>05_03_0403 - 13534954-13535462,13537895-13538050,13538545-13538644
          Length = 254

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -1

Query: 640 NPLRLTRGKKIFKRNGTEYWKINYILSFR*IEKLLKFYKLFTLHISIVIRKSFSK 476
           N    T  KKI K+   +   +N  L    + K  KF +LFTL   + +R+  SK
Sbjct: 15  NSCNKTWRKKISKKQSAQQGGVNQPLVVPQLFKFHKFMRLFTLQEMLFLRRRKSK 69


>01_06_0328 + 28507942-28508610,28509669-28510826
          Length = 608

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 619 GKKIFKRNGTEYWKINYI 566
           GK I + NGTE +K+NYI
Sbjct: 79  GKPILQLNGTEKYKVNYI 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,574,570
Number of Sequences: 37544
Number of extensions: 229719
Number of successful extensions: 406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)