Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j22
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.55 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   1.7  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   2.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.1  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.0  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 538 PVIWSYFAEFQPKKKRGAMLSFMAA 612
           P ++SYFA   P+K+R    +F  A
Sbjct: 113 PQVYSYFAGVNPRKQRRERTTFTRA 137


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 532 SGPVIWSYFAEFQPKK 579
           +G V+W  F +FQP +
Sbjct: 281 NGKVVWEGFGDFQPSQ 296


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 179 RSKSAFSELEPFSGSDFDFLTEGTTPSS 96
           RS SAFS ++P S  D+  + +  +P+S
Sbjct: 149 RSSSAFSYIKPSSERDYFSVKKLPSPAS 176


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 297  TVRLRPHHSD*RMAKQYNLH 356
            T +L+PH SD      Y +H
Sbjct: 1413 TFKLKPHESDVEPIHGYTIH 1432


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 31  KNPHNCDVK 57
           KNP+ CD+K
Sbjct: 220 KNPNGCDIK 228


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,086
Number of Sequences: 336
Number of extensions: 3544
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)