Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j19
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             213   1e-55
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                     210   1e-54
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)             165   3e-41
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)            147   8e-36
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)                 33   0.16 
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)                 30   1.5  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.6  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)                 28   5.9  
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)                     28   5.9  
SB_12316| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  213 bits (519), Expect = 1e-55
 Identities = 108/162 (66%), Positives = 122/162 (75%), Gaps = 2/162 (1%)
 Frame = +1

Query: 184 MAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKE 363
           MA AMKE TE    L  EERNLLSVAYKNVVGA+RSSWRVISSIEQK EGSERK+Q  + 
Sbjct: 1   MAKAMKEATEISETLEQEERNLLSVAYKNVVGAKRSSWRVISSIEQKLEGSERKKQNTET 60

Query: 364 YRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSV 543
           YR  +E EL E+C  VL LL+  LIP A + ESKVFYLKMKGDYYRY  EVA  + R  V
Sbjct: 61  YRQTIENELNEVCETVLKLLESKLIPNAQSTESKVFYLKMKGDYYRYEGEVAGADRRREV 120

Query: 544 VEDSQKAYQDAFEISK--AKMQPTHPIRLGLALNFSVFYYEI 663
           V+ + KAY +A EI++   K+ PT PIRLGLALNFSVFYYEI
Sbjct: 121 VQKAMKAYSEAQEIAEKDPKLPPTDPIRLGLALNFSVFYYEI 162



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 26/45 (57%), Positives = 35/45 (77%), Gaps = 3/45 (6%)
 Frame = +1

Query: 538 SVVEDSQKAYQDAFEISKA---KMQPTHPIRLGLALNFSVFYYEI 663
           +VVE + +AY++A E ++    K+ PT PIRLGLALNFSVF+YEI
Sbjct: 207 TVVEKALQAYKEAKEAAETGDGKLAPTDPIRLGLALNFSVFHYEI 251


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score =  210 bits (512), Expect = 1e-54
 Identities = 107/190 (56%), Positives = 135/190 (71%), Gaps = 3/190 (1%)
 Frame = +1

Query: 103 PSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGA 282
           P+      +EEL+  AK+AEQAERYDDM  AM  VT+ G  L++EERNLLSVAYKNVVGA
Sbjct: 3   PNFVSKCSREELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLNDEERNLLSVAYKNVVGA 62

Query: 283 RRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKAS---N 453
           RRSSWRVISS+EQK    E    + K+YR  +  EL   C +VL +L+ +L+       N
Sbjct: 63  RRSSWRVISSMEQK--APEEMAALTKKYREDITNELNGKCAEVLDILENYLLKDGQDDIN 120

Query: 454 PESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLA 633
            E+KVFYLKM+GDY+RYL EVA G++R   +E S++AY+DA      ++ P+HPIRLGLA
Sbjct: 121 TEAKVFYLKMRGDYHRYLVEVAEGDSRKENIEKSREAYKDA-SAKAEELSPSHPIRLGLA 179

Query: 634 LNFSVFYYEI 663
           LNFSVFYYEI
Sbjct: 180 LNFSVFYYEI 189


>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score =  165 bits (401), Expect = 3e-41
 Identities = 81/138 (58%), Positives = 107/138 (77%)
 Frame = +1

Query: 115 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 294
           M V +E L+  AKL+EQ +RYD+MA  MKEV+E   +LS EERNLLSV+YKN+VG RRSS
Sbjct: 80  MMVVRETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLSKEERNLLSVSYKNIVGQRRSS 139

Query: 295 WRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFY 474
           WRVISSIE+KT  S     + K+Y+  +EKEL+++C +VLG+L++ LIP A + E+KVFY
Sbjct: 140 WRVISSIEEKTAESS-SLAIVKKYKACIEKELKDLCKEVLGILER-LIPGAEDEENKVFY 197

Query: 475 LKMKGDYYRYLAEVATGE 528
            K+KGDYYRYLAE + G+
Sbjct: 198 FKLKGDYYRYLAEFSHGQ 215


>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
          Length = 251

 Score =  147 bits (356), Expect = 8e-36
 Identities = 75/123 (60%), Positives = 93/123 (75%), Gaps = 3/123 (2%)
 Frame = +1

Query: 124 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 303
           DKEE V  AKLAEQAERYDDM  +MKEV + G ELS E+RNLLSVAYKNV+GARR+SWR+
Sbjct: 3   DKEEHVYMAKLAEQAERYDDMVNSMKEVAKMGTELSTEDRNLLSVAYKNVIGARRASWRI 62

Query: 304 ISSIEQKTE--GSE-RKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFY 474
           I+SIEQK E  G +  K +M + YR  +E+EL+ IC ++L LLD  LI  + + ESKVFY
Sbjct: 63  ITSIEQKEESKGEDMAKLEMIRNYRKTIEEELKTICGEILSLLDDSLIKNSQSEESKVFY 122

Query: 475 LKM 483
            K+
Sbjct: 123 NKI 125


>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 2/102 (1%)
 Frame = +1

Query: 115 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 294
           M   + ELVQ AKLAEQ ER++D+   MK+  E    L+ E RNLLSV YKNVVG++R +
Sbjct: 186 MQDSRNELVQLAKLAEQTERFEDVILYMKKAIEINPSLNKEHRNLLSVGYKNVVGSKRFA 245

Query: 295 WRVISSIEQKTEGSERKQQMAK--EYRVKVEKELREICYDVL 414
           WR +     ++    R  Q+    +Y+ K+E EL+ +C ++L
Sbjct: 246 WRHLHHDALQSGRYIRDSQLKGIIKYKEKIEMELKTLCREIL 287


>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
          Length = 442

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 23/86 (26%), Positives = 40/86 (46%)
 Frame = +1

Query: 127 KEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 306
           KE+    AK  ++ ER +  A   K+  E   +   EE++ L    K     R+    + 
Sbjct: 339 KEKERLEAKQKKEQERLEKQAEKEKKEKERLEKKQREEKDRLEKKEKKEEEKRKKEEEIN 398

Query: 307 SSIEQKTEGSERKQQMAKEYRVKVEK 384
           + IE+K +  E+K+Q  +E   K E+
Sbjct: 399 AKIEEKKKREEKKKQEEEEKMKKKEQ 424


>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 994

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 91  ISPLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEER 243
           +SPLPS+      +E+V   KLAE+ E  ++++      T+   E + EE+
Sbjct: 643 VSPLPSTATEDQMQEVVDSNKLAEKKEVTEEVSPVKPLSTKESKENALEEK 693


>SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)
          Length = 416

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +1

Query: 409 VLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEIS 588
           +LGL++ H+ PK+ +   ++F      +Y+ +L  V    T+   +E +   Y    + S
Sbjct: 116 ILGLIESHIDPKSFH--HRMFLAACCLEYFGFLRSVEFTVTQEKCIEQNMPLYAVFIDFS 173

Query: 589 KA 594
           KA
Sbjct: 174 KA 175


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
 Frame = +1

Query: 112  TMSVDKEELVQRAKLAEQAERY---DDMAAAMKEVTETGVELSNE-ERNLLSVAYKNVVG 279
            ++S+  +EL  +  LA Q  +    D   A  K+VT   ++ + E  R    +   +   
Sbjct: 3123 SLSLKSQELEAKNALANQKLKQMVKDQQEAEKKKVTSMEIQTTIETHRKQTIIEMVSCAA 3182

Query: 280  ARRSSWR--------VISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHL 435
              R S++        + SS++++T+  + KQQ   +   +VE  + E    V G+  +HL
Sbjct: 3183 CLRKSYQESAFLDLLITSSLQKQTKQIKEKQQAVMKDLAQVEPAVDEARQAVKGIKKQHL 3242

Query: 436  I 438
            +
Sbjct: 3243 V 3243


>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/100 (22%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
 Frame = +1

Query: 103  PSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLL-SVAYKNVVG 279
            PSS  S DK+E+ +++  +++++   ++A   K + E   ++S     +  S+  K  + 
Sbjct: 1066 PSSRSSHDKDEISEKSNPSDKSD--VEVARKNKHMPEALYKISETISGMNDSITLKEPLK 1123

Query: 280  ARRSSWR--VISSIEQKTEGSERKQQMAKEYRVKVEKELR 393
            A+    R      ++ + E  +R+  + K++R++ EK+ R
Sbjct: 1124 AKDGDGRNKEEQELKDRMENEKREDTIRKQHRLQWEKKAR 1163


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
 Frame = +1

Query: 127 KEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGAR------R 288
           ++ L +  K A   +R   +A+A+ +     +   +     LS   K VV  +      +
Sbjct: 279 QKTLSEMFKQAVTEDRPKMLASAITKALNQDIHSPSALNLPLSTPAKQVVKTKWDRIREK 338

Query: 289 SSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASN 453
             W ++S  E+    +ER++Q   E +VK E++ R+   ++  +   HL  K SN
Sbjct: 339 HQWNLLSEDEKNKIKAERRKQKRLELKVKREEKERKRLEELKRVSFAHLGMKLSN 393


>SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
          Length = 512

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +1

Query: 145 RAKLAEQAERYDDMAAAM-KEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQ 321
           + K+ +++E+YD +   + KE T+ G   +  E    +    N   AR  +    ++ + 
Sbjct: 13  KRKIFKKSEKYDRLEEPLEKEGTDGGEIEAEAEVEPHTEEEANYNEARSENCEKNNNNDS 72

Query: 322 KTEGSERKQQMAKEYRVKVEKELRE 396
            T  ++ +Q   KE+ V +EK+L++
Sbjct: 73  STPDAKSQQADIKEWIVSLEKQLKD 97


>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1126

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 298  RVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 402
            R++  IE+K E  E  ++ AKE + + E+E + IC
Sbjct: 919  RIMKEIEEK-EKKEEAERKAKEEKEREERERKRIC 952


>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
          Length = 783

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 343 KQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 444
           K++M ++Y  K+EKE+    Y+++  L K ++ K
Sbjct: 292 KEEMKEKYDGKIEKEMSGAIYEIISRLMKAVVGK 325


>SB_12316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 26/99 (26%), Positives = 47/99 (47%)
 Frame = +1

Query: 100 LPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVG 279
           L S+   +D+E    R +++++  RY  + A MK V E   +  ++E    +   +    
Sbjct: 539 LDSNLSKLDQEVRGLREEISQEESRYHYLHAMMK-VLEIQQKRIDDEMKAYTAQDQ---A 594

Query: 280 ARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELRE 396
            R+ SWR     EQ T   + ++ + K  R K +K +RE
Sbjct: 595 DRKKSWR-----EQYTRKIQEQENLGKSLREK-QKAVRE 627


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,790,917
Number of Sequences: 59808
Number of extensions: 414917
Number of successful extensions: 1228
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)