Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j16
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   2.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   2.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   2.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.2  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    22   5.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 680 RMFKYILINFC*QCPIMALTVWLQTWL 600
           R F Y LI     C ++ +  W+  WL
Sbjct: 239 REFSYYLIQIYIPCCMLVIVSWVSFWL 265


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 680 RMFKYILINFC*QCPIMALTVWLQTWL 600
           R F Y LI     C ++ +  W+  WL
Sbjct: 239 REFSYYLIQIYIPCCMLVIVSWVSFWL 265


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 668 YILINFC*QCPIMALTVWLQTWLVY 594
           Y+++ FC  C      V+  TWL Y
Sbjct: 347 YVIVPFCPDCCPSDRMVYFITWLGY 371


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 668 YILINFC*QCPIMALTVWLQTWLVY 594
           Y+++ FC  C      V+  TWL Y
Sbjct: 347 YVIVPFCPDCCPSDRMVYFITWLGY 371


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 668 YILINFC*QCPIMALTVWLQTWLVY 594
           Y+++ FC  C      V+  TWL Y
Sbjct: 347 YVIVPFCPDCCPSDRMVYFITWLGY 371


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 151 QEAFQLFDS-RGDGKIHVAQIGDAL 222
           + +F ++ S +GDGK H+   G+ L
Sbjct: 170 EPSFYIYPSLQGDGKFHLLPTGELL 194


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 151 QEAFQLFDS-RGDGKIHVAQIGDAL 222
           + +F ++ S +GDGK H+   G+ L
Sbjct: 170 EPSFYIYPSLQGDGKFHLLPTGELL 194


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 481 QLLQGQEDSQGNINYENF 534
           Q +QG+E +  ++N ENF
Sbjct: 35  QEMQGKEKNSASLNSENF 52


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 409 THCHLCQNGADPQ*SH*QCR 350
           T C  C+ G  P  +H  CR
Sbjct: 624 TQCISCRQGTVPDETHSACR 643


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,467
Number of Sequences: 438
Number of extensions: 3907
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)