Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j15
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    30   0.40 
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.5  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = +1

Query: 196 TINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGA 375
           TI+ ++F        E   + ++ N+   + ++ + A+  V V++ TR    +   IVG 
Sbjct: 730 TIDIESFWTPVDVVEEKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKSDPYARVIVGN 789

Query: 376 GLMLMLIATPDN 411
            ++   + TP+N
Sbjct: 790 SVVARTVYTPNN 801


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = -3

Query: 632 NSVINVPPRNSQL--PRSASIAAAEKHTNTRV--VPSRAVIMIDGSTTLTYS--SRGPML 471
           N+ + +PPR +     R +++  +    ++ V  VPS +   ++  TT   S  SR PML
Sbjct: 318 NNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYTTSVPSGMSRHPML 377

Query: 470 MPDVNPNPS 444
           M    P PS
Sbjct: 378 MNPSTPEPS 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,964
Number of Sequences: 5004
Number of extensions: 59791
Number of successful extensions: 153
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)