Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j15
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...    78   8e-15
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237     31   0.72 
03_01_0560 + 4162206-4162607                                           30   1.7  
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644...    30   1.7  
01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24...    29   5.1  
05_07_0084 - 27587307-27589175                                         28   6.7  
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552     28   8.9  

>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 1/169 (0%)
 Frame = +1

Query: 235 RLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNG 414
           ++ P V+ HLK VY TL +   +++ G Y+ +      G L+ +   G +  L + P   
Sbjct: 28  QISPAVQSHLKLVYLTLCVALAASAVGAYLHVALNI-GGMLTMLGCVGSIAWLFSVPVFE 86

Query: 415 KNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERG 594
           +    R G LL   L  G S+GPL++     D SI++TA +GT + F CF+ AA++A+R 
Sbjct: 87  ERK--RFGILLAAALLEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAKRR 144

Query: 595 SWXXXXXXXXXXXXSMS-LMTLVNLFMQSHFLYQAHLYLGLMLMCGFVL 738
            +             +  L    ++F  S   +   +Y GL++  G+++
Sbjct: 145 EYLYLGGLLSSGLSILLWLQFAASIFGHSTGSFMFEVYFGLLIFLGYMV 193


>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
          Length = 572

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 346 AGFLSAIVGAGLMLMLIATPD-NGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSII 522
           AG LS++  AG  L + ++       T+  +G ++GFG+  G         ++ V  S +
Sbjct: 222 AGLLSSLAAAGTWLQVASSYGWPVSTTHCIVGAMVGFGIVFGGVNAVFWSSLARVSSSWV 281

Query: 523 ITALLGTTLVFVCF 564
           I+ L+G  + F+ +
Sbjct: 282 ISPLMGAAVSFIVY 295


>03_01_0560 + 4162206-4162607
          Length = 133

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 331 FTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 480
           F  F  G   A+  A L L+L+A  D     +   G+L G  LT   S+G
Sbjct: 58  FLSFTIGTALALAAAYLALLLLAATDKMLGADAVTGFLWGADLTGAASLG 107


>01_01_0827 +
           6443319-6446085,6446317-6446407,6446502-6448017,
           6448164-6448243,6449045-6449129,6449221-6449312,
           6449388-6449456,6449544-6449580,6449662-6449744,
           6450427-6450873,6450978-6451014,6451101-6451158,
           6451243-6451382,6451610-6451675,6451794-6451908,
           6453261-6453299,6453482-6453543
          Length = 1927

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = -3

Query: 590 RSASIAAAEKHTNTRVVPSRAVIMID------GSTTLTYSSRGPMLMPDVNPNPSR*PSR 429
           R++++ ++EK +    VP     +++      G T +  SS GP    D+N  P+R P +
Sbjct: 37  RTSAVVSSEKESANSFVPHNGTGLVERISNDAGLTEVVGSSAGPTECIDLNKTPARKPKK 96

Query: 428 K 426
           K
Sbjct: 97  K 97


>01_01_0032 -
           247971-248107,248369-248468,248861-248959,249617-249781,
           249860-249940,250316-250384,250695-250790,252232-252282,
           253361-253419,254255-254324,254325-254553,254674-255098,
           255361-255441
          Length = 553

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 193 NTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDM-FTRFQAGFLSAI 366
           N ++    + + +N+     +Q +K + A+L  TC S S   Y D+   R+    +SAI
Sbjct: 422 NNVHALDQLRTIKNKANSTSQQFVKKMMASLPYTCQSQSPSPYFDLSLFRYDEKLISAI 480


>05_07_0084 - 27587307-27589175
          Length = 622

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 611 PRNSQL-PRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRG 480
           P  S+  P +AS  A   H+ + V+P   V++  G+T   Y+  G
Sbjct: 446 PEGSRFRPLAASTVARMYHSTSAVLPDATVLVAGGNTNAAYNFSG 490


>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
          Length = 471

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -3

Query: 659 TKVISDIDVNSVINVPPRNSQLPRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRG 480
           T V SD   N V +V      LP      +AEK  + +  P+   +MID ++ LTY  +G
Sbjct: 37  TVVTSDYGGNFVKDVCIDEGVLPHRK--ISAEKKLDEKSPPNFDFLMIDTNSDLTYGGKG 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,539,110
Number of Sequences: 37544
Number of extensions: 378830
Number of successful extensions: 792
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)