Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j15
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12968| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_3787| Best HMM Match : Pentapeptide_2 (HMM E-Value=3)               30   2.3  
SB_13281| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_21442| Best HMM Match : p450 (HMM E-Value=0)                        29   3.9  

>SB_12968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 511 PSIIITALLGTTLVFVCFSAAAMLAERGS 597
           P I++TA   T ++F CF+ +A+ AE+ S
Sbjct: 70  PLIVVTAFFATVMIFACFTVSALWAEQRS 98


>SB_3787| Best HMM Match : Pentapeptide_2 (HMM E-Value=3)
          Length = 324

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 585 SKHSSSREAYKYQGSAEQSSYYDRWVNYTDIFKQGTHAH 469
           S + S R +    GSA+ SS  D +V+Y +I+  G   H
Sbjct: 266 SSNGSKRSSNSSTGSAKHSSDSDDYVDYQEIYGDGQEKH 304


>SB_13281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -2

Query: 642 HRREQCHQCATEE*PAASFSKHSSSREAYKYQGSAEQSSYYDRWVNYTDIFK 487
           HR  QC++C      ++S +KH   RE    Q    Q S++ R+VN T+ +K
Sbjct: 362 HRPHQCNECGKRFSQSSSLNKHLRWRET--VQVPLLQQSFH-RFVNSTNPYK 410


>SB_21442| Best HMM Match : p450 (HMM E-Value=0)
          Length = 565

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = +1

Query: 151 SLFKDPSESKKKNMNTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDM 330
           +L KD + S    +++I++  +V     RL PP  +HL+      ++  V+ S GVYV +
Sbjct: 340 ALEKDGNMSTYDFVHSIDYLDWVIKEVLRLCPPGHRHLRECEEECVINGVTFSKGVYVQI 399

Query: 331 FT 336
            T
Sbjct: 400 PT 401


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,717,633
Number of Sequences: 59808
Number of extensions: 447125
Number of successful extensions: 1012
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)